Best Alignments for TR488

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2he2A	1.1403e-13	2he2A/TR488-2he2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ozfA	1.2228e-13	2ozfA/TR488-2ozfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1g9oA	1.2893e-13	1g9oA/TR488-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1tp5A	1.3684e-13	1tp5A/TR488-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2he4A	1.9149e-13	2he4A/TR488-2he4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qg1A	2.5983e-13	2qg1A/TR488-2qg1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h2bA	4.6647e-13	2h2bA/TR488-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2opgA	6.2001e-13	2opgA/TR488-2opgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qt5A	8.8314e-13	2qt5A/TR488-2qt5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2awxA	9.4674e-13	2awxA/TR488-2awxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fe5A	1.0237e-12	2fe5A/TR488-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2i1nA	1.1912e-12	2i1nA/TR488-2i1nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fcfA	1.4306e-12	2fcfA/TR488-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1nf3C	1.4649e-12	1nf3C/TR488-1nf3C-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2ocsA	1.5523e-12	2ocsA/TR488-2ocsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n7eA	1.6865e-12	1n7eA/TR488-1n7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2jikA	1.7204e-12	2jikA/TR488-2jikA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qauA	1.8282e-12	1qauA/TR488-1qauA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1q3oA	1.8365e-12	1q3oA/TR488-1q3oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2iwnA	2.0985e-12	2iwnA/TR488-2iwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001