# List of top-scoring protein chains for TR488.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 2.53e-08 1rgrA 99 4.42e-08 b.36.1.1 104931 1um7A 113 4.84e-08 b.36.1.1 99579 1kefA 93 5.77e-08 b.36.1.1 72369 1zokA 93 6.67e-08 b.36.1.1 125451 1iu0A 91 7.52e-08 b.36.1.1 83707 2i1nA 102 8.66e-08 2dkrA 93 9.52e-08 2enoA 120 9.57e-08 2dm8A 116 1.03e-07 2jikA 101 1.07e-07 2jinA 102 1.17e-07 1tp5A 119 1.21e-07 b.36.1.1 119305 1be9A 119 1.40e-07 b.36.1.1 24774 1pdrA 99 1.56e-07 b.36.1.1 24771 2fneA 117 1.85e-07 b.36.1.1 133813 2fcfA 103 2.31e-07 b.36.1.1 133267 2iwqA 123 2.31e-07 2bygA 117 2.37e-07 b.36.1.1 129480 2r4hA 112 2.39e-07 1gq5A 91 2.64e-07 b.36.1.1 76274 1i92A 91 2.82e-07 b.36.1.1 61990 2he4A 90 2.92e-07 1gq4A 90 2.95e-07 b.36.1.1 70340 2opgA 98 2.97e-07 1d5gA 96 3.00e-07 b.36.1.1 70080 1g9oA 91 3.05e-07 b.36.1.1 60400 2i0iA 85 3.32e-07 b.36.1.1 136953 2ocsA 88 3.54e-07 2awxA 105 3.68e-07 1x5qA 110 4.04e-07 b.36.1.1 121717 1vj6A 102 4.13e-07 b.36.1.1 120064 1gm1A 94 4.22e-07 b.36.1.1 70271 2jreA 108 4.45e-07 2qg1A 92 4.48e-07 2fe5A 94 4.49e-07 b.36.1.1 133323 2awwA 105 5.03e-07 1whaA 105 5.19e-07 b.36.1.1 114638 2g2lA 105 5.20e-07 2awuA 105 5.36e-07 2dc2A 103 5.60e-07 1uhpA 107 6.71e-07 b.36.1.1 99400 2jilA 97 7.05e-07 1wfvA 103 7.21e-07 b.36.1.1 114594 2dazA 124 7.42e-07 1wf8A 107 7.57e-07 b.36.1.1 120967 1uezA 101 7.72e-07 b.36.1.1 99286 2qt5A 200 8.00e-07 2oqsA 97 8.34e-07 2iwoA 120 9.39e-07 2o2tA 117 9.90e-07 1z87A 263 1.01e-06 2d90A 102 1.05e-06 1qlcA 95 1.18e-06 b.36.1.1 24776 2ogpA 97 1.19e-06 2djtA 104 1.22e-06 2fn5A 94 1.22e-06 1qavA 90 1.30e-06 b.36.1.1 24777 1q7xA 108 1.34e-06 b.36.1.1 96059 1uewA 114 1.35e-06 b.36.1.1 99281 2ozfA 92 1.35e-06 2dmzA 129 1.55e-06 1z86A 87 1.68e-06 b.36.1.1 124690 2vrfA 95 1.74e-06 2pdzA 86 1.78e-06 b.36.1.1 24778 1ujuA 111 1.91e-06 b.36.1.1 99469 1uf1A 128 2.05e-06 b.36.1.1 99288 1oziA 99 2.16e-06 b.36.1.1 93845 2ehrA 117 2.54e-06 2g5mB 113 2.64e-06 2iwnA 97 2.66e-06 2csjA 117 2.78e-06 b.36.1.1 130771 1um1A 110 2.80e-06 b.36.1.1 99578 1ueqA 123 2.99e-06 b.36.1.1 99271 1ihjA 98 3.21e-06 b.36.1.1 62382 2dluA 111 3.22e-06 2eeiA 106 3.63e-06 2pktA 91 3.70e-06 1qavB 115 4.10e-06 b.36.1.1 24780 1n7eA 97 4.16e-06 b.36.1.1 91691 1b8qA 127 4.19e-06 b.36.1.1 24781 2eejA 96 4.24e-06 1t2mA 101 4.33e-06 b.36.1.1 119133 2reyA 100 4.40e-06 2i0lA 84 4.49e-06 1xz9A 101 4.74e-06 b.36.1.1 122471 2v90A 96 4.93e-06 2edzA 114 5.20e-06 2ainA 93 5.35e-06 2q9vA 90 5.36e-06 1qauA 112 5.37e-06 b.36.1.1 24779 1x8sA 102 5.44e-06 b.36.1.1 114967 1wi2A 104 6.14e-06 b.36.1.1 114659 1ry4A 128 6.26e-06 b.36.1.1 98085 1mfgA 95 6.32e-06 b.36.1.1 79043 2db5A 128 6.35e-06 2h3lA 103 6.39e-06 b.36.1.1 136046 1uepA 103 6.42e-06 b.36.1.1 99270 1rzxA 98 6.44e-06 b.36.1.1 98236 2yuyA 126 6.51e-06 2f0aA 98 7.09e-06 b.36.1.1 132661 1l6oA 95 7.76e-06 b.36.1.1 84534 1mc7A 95 7.93e-06 b.36.1.1 91241 2d92A 108 8.66e-06 1x6dA 119 8.90e-06 b.36.1.2 121739 1q3oA 109 9.56e-06 b.36.1.1 95700 1vb7A 94 9.57e-06 b.36.1.1 108474 3b76A 118 1.02e-05 1nf3C 128 1.02e-05 b.36.1.1 85596 2z17A 104 1.02e-05 1wh1A 124 1.04e-05 b.36.1.1 114629 1v5lA 103 1.15e-05 b.36.1.1 108378 2v1wA 90 1.16e-05 2omjA 89 1.17e-05 2h2cA 107 1.24e-05 2h2bA 107 1.24e-05 2jweA 88 1.31e-05 1m5zA 91 1.32e-05 b.36.1.1 78676 2qbwA 195 1.34e-05 2uzcA 88 1.35e-05 1wg6A 127 1.36e-05 b.36.1.1 114603 1v62A 117 1.41e-05 b.36.1.1 108390 2k1zA 104 1.45e-05 2rczA 81 1.60e-05 2h3mA 97 1.70e-05 1x5nA 114 1.80e-05 b.36.1.1 121714 2eehA 100 1.81e-05 2pa1A 87 1.95e-05 1x5rA 112 1.99e-05 b.36.1.1 121718 2eegA 94 1.99e-05 1w9eA 166 2.22e-05 b.36.1.1,b.36.1.1 120779,120780 1kwaA 88 2.40e-05 b.36.1.1 24772 1uitA 117 2.45e-05 b.36.1.1 99433 2f5yA 91 2.73e-05 b.36.1.1 133015 1wf7A 103 2.77e-05 b.36.1.1 114577 1i16A 130 2.91e-05 b.36.1.2 24787 2i04A 85 3.17e-05 2q3gA 89 3.18e-05 2ev8A 97 3.19e-05 2osgA 83 3.56e-05 2ejyA 97 3.75e-05 2dlsA 93 3.95e-05 3bpuA 88 3.95e-05 1rgwA 85 4.09e-05 b.36.1.1 97455 2egkA 101 4.43e-05 1wjlA 90 4.63e-05 b.36.1.1 114701 2pkuA 87 4.72e-05 2egoA 96 5.22e-05 2gzvA 114 5.27e-05 1wi4A 109 5.34e-05 b.36.1.1 120973 2pntA 98 5.40e-05 1p1dA 196 5.50e-05 b.36.1.1,b.36.1.1 93896,93897 1whdA 100 5.64e-05 b.36.1.1 114641 2vphA 100 5.77e-05 2cs5A 119 6.07e-05 b.36.1.1 130747 2cssA 121 6.87e-05 b.36.1.1 130780 1u3bA 185 7.31e-05 b.36.1.1,b.36.1.1 119508,119509 2edpA 100 7.78e-05 1va8A 113 8.67e-05 b.36.1.1 119903 1v5qA 122 9.19e-05 b.36.1.1 108383 2edvA 96 9.95e-05 1wfgA 131 0.000101 b.36.1.1 114581 1y7nA 90 0.000102 b.36.1.1 122700 1p1eA 101 0.000106 b.36.1.1 93898 1u39A 80 0.000118 b.36.1.1 119503 1zubA 114 0.000141 b.36.1.1 125665 1x45A 98 0.000157 b.36.1.1 121679 1u37A 89 0.000163 b.36.1.1 119501 1ujdA 117 0.000186 b.36.1.1 99454 1ujvA 96 0.000206 b.36.1.1 99470 2yt8A 94 0.000209 2yt7A 101 0.000258 2qktA 90 0.000328 1v6bA 118 0.000429 b.36.1.1 108394 2qkvA 96 0.000434 1r6jA 82 0.000471 b.36.1.1 97151 2e7kA 91 0.000619 1obxA 79 0.000754 b.36.1.1 86783 1wifA 126 0.000887 b.36.1.1 114669 1vaeA 111 0.001161 b.36.1.1 108466 1ufxA 103 0.002374 b.36.1.1 99359 2eaqA 90 0.002381 2d8iA 114 0.005259 2ytwA 118 0.01196 2vsvA 109 0.01322 2joaA 105 0.01328 2yubA 118 0.01359 2p3wA 112 0.02670 2pzdA 113 0.05032 3cs0A 448 0.2413 1ky9A 448 0.2584 b.36.1.4,b.47.1.1 73198,73199 1fc6A 388 0.2883 b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 0.3333 b.36.1.4,b.47.1.1 73834,73835 1fc9A 388 0.3709 b.36.1.3,c.14.1.2 64742,64743 1sotA 320 0.9073 b.36.1.4,b.47.1.1 105852,105853 1sozA 314 0.9134 b.36.1.4,b.47.1.1 105859,105860 1te0A 318 0.9137 b.36.1.4,b.47.1.1 112400,112401 2hgaA 125 1.235 2z9iA 324 14.07 2dy0A 190 26.02 2bh4X 134 37.93 2bgvX 134 38.76 2plnA 137 40.52 2hqoA 123 45.99 1x6vA 630 54.99 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2i6vA 87 63.75 1mkmA 249 68.16 a.4.5.33,d.110.2.2 79242,79243 1zn8A 180 75.69 c.61.1.1 125376 2hqrA 223 77.72 1gph1 465 79.27 1ao0A 459 79.59 c.61.1.1,d.153.1.1 34049,41816 2i4sA 105 86.89