# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 3.45e-14 1tp5A 119 3.64e-14 b.36.1.1 119305 2qg1A 92 3.82e-14 1g9oA 91 5.69e-14 b.36.1.1 60400 2he4A 90 9.92e-14 2ozfA 92 1.02e-13 2awxA 105 1.10e-13 2opgA 98 1.12e-13 1qauA 112 1.49e-13 b.36.1.1 24779 2i1nA 102 1.91e-13 2fneA 117 2.02e-13 b.36.1.1 133813 2jilA 97 2.36e-13 2fe5A 94 2.45e-13 b.36.1.1 133323 2iwnA 97 2.70e-13 2jikA 101 2.94e-13 1nf3C 128 3.26e-13 b.36.1.1 85596 1kwaA 88 3.50e-13 b.36.1.1 24772 1qavA 90 4.07e-13 b.36.1.1 24777 1n7eA 97 4.24e-13 b.36.1.1 91691 2fcfA 103 4.30e-13 b.36.1.1 133267 2ocsA 88 5.14e-13 2qkvA 96 5.22e-13 2v90A 96 5.22e-13 2iwoA 120 6.54e-13 1ihjA 98 7.93e-13 b.36.1.1 62382 2f5yA 91 1.01e-12 b.36.1.1 133015 1q3oA 109 1.04e-12 b.36.1.1 95700 2pa1A 87 1.15e-12 1x45A 98 1.38e-12 b.36.1.1 121679 2pktA 91 1.81e-12 2uzcA 88 1.90e-12 2egoA 96 1.90e-12 2reyA 100 1.95e-12 2f0aA 98 2.06e-12 b.36.1.1 132661 2h2bA 107 2.08e-12 2qt5A 200 2.19e-12 2q3gA 89 3.03e-12 2q9vA 90 3.70e-12 2i04A 85 4.03e-12 2gzvA 114 5.52e-12 1r6jA 82 5.58e-12 b.36.1.1 97151 1wf7A 103 7.86e-12 b.36.1.1 114577 2h3lA 103 1.21e-11 b.36.1.1 136046 2vphA 100 1.52e-11 1fc6A 388 2.13e-11 b.36.1.3,c.14.1.2 64738,64739 2eaqA 90 3.10e-11 1mfgA 95 5.56e-11 b.36.1.1 79043 3bpuA 88 6.38e-11 2rczA 81 7.21e-11 1y8tA 324 9.96e-07 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 1.30e-06 2p3wA 112 2.82e-06 1te0A 318 4.83e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 2.73e-05 b.36.1.4,b.47.1.1 73834,73835 1k32A 1045 0.002388 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.005122 c.14.1.2 66425 2i6vA 87 0.4164 2g8oA 264 6.400 d.117.1.1 134779 2g8mA 264 7.399 1bkpA 278 8.741 d.117.1.1 41029 1l1qA 186 9.499 c.61.1.1 77653 2zbvA 263 9.547 2cw5A 255 12.31 2q6kA 283 12.69 1ypvA 313 12.76 2i62A 265 18.36 1qqqA 264 21.39 d.117.1.1 40931 1mi8A 158 21.65 b.86.1.2 91279 1g2qA 187 22.94 c.61.1.1 65117 1l3kA 196 24.69 d.58.7.1,d.58.7.1 73539,73540 1v9sA 208 26.18 c.61.1.1 119894 1f5nA 592 28.73 a.114.1.1,c.37.1.8 19077,32152 1y0bA 197 33.76 c.61.1.1 122476 2zmvA 227 35.15 1vctA 205 35.20 a.7.12.1,d.286.1.1 119986,119987 1w30A 201 36.18 c.61.1.1 114118 1ev5A 264 38.23 d.117.1.1 40935 2j69A 695 38.89 2og9A 393 41.12 2jbhA 225 41.40 1f28A 297 41.72 d.117.1.1 59608 2j3tD 219 41.93 1dmgA 225 41.97 c.22.1.1 31036 3bs5A 106 43.12 2adzA 178 44.43 b.55.1.1 126599 1h5rA 293 47.77 c.68.1.6 65623 2asbA 251 48.23 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2igbA 179 49.01 1fi2A 201 50.75 b.82.1.2 59845 2ad9A 119 51.10 d.58.7.1 126580 2gt1A 326 52.27 2zivA 311 52.60 1h9oA 112 54.27 d.93.1.1 60837 2guiA 194 55.51 c.55.3.5 135737 2f4nA 273 58.00 1guqA 348 62.21 d.13.1.2,d.13.1.2 37522,37523 1zn8A 180 62.79 c.61.1.1 125376 1cjbA 231 66.63 c.61.1.1 34079 2p1zA 180 67.49 2yzkA 178 67.51 2aeeA 211 68.01 c.61.1.1 126620 1u9yA 284 69.26 c.61.1.2,c.61.1.2 119655,119656 1w8oA 601 69.56 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1h70A 255 71.41 d.126.1.3 60711 1tzfA 259 72.00 c.68.1.13 107476 1pujA 282 80.04 c.37.1.8 88294 1mhmB 72 80.63 d.156.1.1 79129 2r8rA 228 81.20 1lh0A 213 81.36 c.61.1.1 73896 1l5jA 865 82.07 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 3cfuA 159 83.88 1a3c 181 84.35 1zh5A 195 85.76 a.4.5.46,d.58.7.1 125073,125074 1eceA 358 87.12 c.1.8.3 28813 4dfrA 159 88.70 c.71.1.1 34822 3bbdA 205 89.92