# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 1.59e-14 2qg1A 92 1.84e-14 1tp5A 119 1.88e-14 b.36.1.1 119305 1g9oA 91 2.87e-14 b.36.1.1 60400 1qauA 112 4.46e-14 b.36.1.1 24779 2awxA 105 4.51e-14 2ozfA 92 4.86e-14 2i1nA 102 5.57e-14 2he4A 90 6.04e-14 2fe5A 94 6.56e-14 b.36.1.1 133323 2opgA 98 7.29e-14 2jikA 101 7.91e-14 1qavA 90 9.40e-14 b.36.1.1 24777 2fneA 117 1.05e-13 b.36.1.1 133813 2jilA 97 1.06e-13 1n7eA 97 1.09e-13 b.36.1.1 91691 2qkvA 96 1.12e-13 1kwaA 88 1.38e-13 b.36.1.1 24772 2iwnA 97 1.42e-13 2fcfA 103 1.87e-13 b.36.1.1 133267 2ocsA 88 1.89e-13 1nf3C 128 2.45e-13 b.36.1.1 85596 2iwoA 120 3.39e-13 2v90A 96 3.44e-13 2f5yA 91 3.96e-13 b.36.1.1 133015 1x45A 98 4.04e-13 b.36.1.1 121679 1ihjA 98 4.26e-13 b.36.1.1 62382 2qt5A 200 4.88e-13 2pa1A 87 4.94e-13 1q3oA 109 5.49e-13 b.36.1.1 95700 2pktA 91 5.64e-13 2reyA 100 5.64e-13 2uzcA 88 6.90e-13 2h2bA 107 7.22e-13 2q3gA 89 7.25e-13 2q9vA 90 7.27e-13 2egoA 96 7.51e-13 2f0aA 98 9.62e-13 b.36.1.1 132661 2gzvA 114 9.69e-13 2i04A 85 1.16e-12 1wf7A 103 1.35e-12 b.36.1.1 114577 1r6jA 82 2.47e-12 b.36.1.1 97151 2rczA 81 3.85e-12 2vphA 100 4.45e-12 2h3lA 103 5.16e-12 b.36.1.1 136046 1fc6A 388 6.30e-12 b.36.1.3,c.14.1.2 64738,64739 1mfgA 95 1.55e-11 b.36.1.1 79043 2eaqA 90 1.65e-11 3bpuA 88 2.60e-11 1y8tA 324 3.55e-07 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 8.35e-07 1te0A 318 2.44e-06 b.36.1.4,b.47.1.1 112400,112401 2p3wA 112 2.85e-06 1lcyA 325 2.39e-05 b.36.1.4,b.47.1.1 73834,73835 1k32A 1045 0.000940 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.005664 c.14.1.2 66425 2i6vA 87 0.1035 1l3kA 196 5.620 d.58.7.1,d.58.7.1 73539,73540 1l1qA 186 7.815 c.61.1.1 77653 2zbvA 263 8.096 2g8oA 264 10.56 d.117.1.1 134779 2cw5A 255 10.76 1bkpA 278 11.70 d.117.1.1 41029 2g8mA 264 12.17 1g2qA 187 16.32 c.61.1.1 65117 2q6kA 283 16.82 1qqqA 264 19.05 d.117.1.1 40931 1ypvA 313 25.34 2adzA 178 26.09 b.55.1.1 126599 2jbhA 225 28.18 1u9yA 284 28.65 c.61.1.2,c.61.1.2 119655,119656 2igbA 179 31.34 2zmvA 227 32.72 1ev5A 264 33.46 d.117.1.1 40935 1w30A 201 33.54 c.61.1.1 114118 2ywkA 95 39.74 2og9A 393 40.25 2j3tD 219 41.53 1a3c 181 44.43 2o38A 120 49.11 1v9sA 208 50.32 c.61.1.1 119894 1y0bA 197 52.04 c.61.1.1 122476 1zn8A 180 52.32 c.61.1.1 125376 1zh5A 195 53.44 a.4.5.46,d.58.7.1 125073,125074 3bs5A 106 53.91 2zivA 311 54.18 1dmgA 225 54.86 c.22.1.1 31036 2p1zA 180 55.68 1mi8A 158 55.98 b.86.1.2 91279 1vctA 205 57.69 a.7.12.1,d.286.1.1 119986,119987 1cjbA 231 59.16 c.61.1.1 34079 1vchA 175 59.23 c.61.1.1 119980 2pi6A 361 60.27 2i62A 265 63.80 1h70A 255 65.18 d.126.1.3 60711 1oroA 213 66.11 c.61.1.1 34093 2guiA 194 67.11 c.55.3.5 135737 1vs0A 310 67.25 1f28A 297 68.03 d.117.1.1 59608 2z1cA 75 70.49 2asbA 251 71.23 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1lh0A 213 71.84 c.61.1.1 73896 2f4nA 273 73.78 2yzkA 178 73.95 1iq8A 582 74.30 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1dkuA 317 74.79 c.61.1.2,c.61.1.2 34118,34119 1pujA 282 79.87 c.37.1.8 88294 2v40A 459 79.92 1f5nA 592 81.27 a.114.1.1,c.37.1.8 19077,32152 2e5iA 124 81.45 2jsnA 96 81.52 1fxlA 167 81.60 d.58.7.1,d.58.7.1 39183,39184 2g5cA 281 81.97 a.100.1.12,c.2.1.6 134646,134647 1h5rA 293 82.09 c.68.1.6 65623 1fv5A 36 86.30 g.37.1.2 45075 2ad9A 119 87.19 d.58.7.1 126580 1wd5A 208 88.64 c.61.1.1 114524