# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 1.76e-15 b.36.1.1 119305 2he2A 102 1.96e-15 2qg1A 92 4.93e-15 2ozfA 92 5.34e-15 1g9oA 91 6.10e-15 b.36.1.1 60400 2he4A 90 7.84e-15 1n7eA 97 9.08e-15 b.36.1.1 91691 2opgA 98 1.08e-14 2jikA 101 1.11e-14 1qavA 90 1.15e-14 b.36.1.1 24777 2fneA 117 1.41e-14 b.36.1.1 133813 1qauA 112 1.43e-14 b.36.1.1 24779 2i1nA 102 1.60e-14 2awxA 105 1.74e-14 2v90A 96 2.20e-14 2jilA 97 2.30e-14 1nf3C 128 2.32e-14 b.36.1.1 85596 1kwaA 88 2.71e-14 b.36.1.1 24772 2iwnA 97 2.81e-14 2fe5A 94 3.06e-14 b.36.1.1 133323 2qt5A 200 3.51e-14 2ocsA 88 3.57e-14 2fcfA 103 5.21e-14 b.36.1.1 133267 2qkvA 96 5.34e-14 2q3gA 89 5.77e-14 2iwoA 120 7.26e-14 1wf7A 103 7.37e-14 b.36.1.1 114577 1ihjA 98 7.46e-14 b.36.1.1 62382 2pktA 91 7.62e-14 2uzcA 88 8.85e-14 2gzvA 114 9.34e-14 2pa1A 87 1.04e-13 2f5yA 91 1.14e-13 b.36.1.1 133015 1x45A 98 1.20e-13 b.36.1.1 121679 1q3oA 109 1.21e-13 b.36.1.1 95700 2egoA 96 1.24e-13 2q9vA 90 1.36e-13 2f0aA 98 1.37e-13 b.36.1.1 132661 2h2bA 107 2.07e-13 1r6jA 82 2.59e-13 b.36.1.1 97151 2i04A 85 3.41e-13 2reyA 100 4.49e-13 2rczA 81 5.79e-13 2vphA 100 6.83e-13 2h3lA 103 7.87e-13 b.36.1.1 136046 1fc6A 388 8.26e-13 b.36.1.3,c.14.1.2 64738,64739 2eaqA 90 5.38e-12 1mfgA 95 7.16e-12 b.36.1.1 79043 3bpuA 88 1.09e-11 2z9iA 324 2.07e-07 1y8tA 324 4.42e-07 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 6.09e-07 1te0A 318 2.12e-06 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 4.08e-06 b.36.1.4,b.47.1.1 73834,73835 1k32A 1045 7.48e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.01260 c.14.1.2 66425 2i6vA 87 0.01483 1y0bA 197 1.657 c.61.1.1 122476 2aeeA 211 1.931 c.61.1.1 126620 1g2qA 187 2.128 c.61.1.1 65117 2zbvA 263 2.331 2jsnA 96 4.252 1l1qA 186 4.265 c.61.1.1 77653 1o57A 291 4.473 a.4.5.40,c.61.1.1 92483,92484 1zn8A 180 4.625 c.61.1.1 125376 2cw5A 255 4.786 1vctA 205 6.131 a.7.12.1,d.286.1.1 119986,119987 2z1cA 75 7.205 2zmvA 227 7.614 2q6kA 283 7.956 1u9yA 284 9.024 c.61.1.2,c.61.1.2 119655,119656 2p1zA 180 10.13 1cjbA 231 11.33 c.61.1.1 34079 1l3kA 196 11.80 d.58.7.1,d.58.7.1 73539,73540 1vs0A 310 12.30 1vchA 175 13.05 c.61.1.1 119980 2o38A 120 15.54 3dahA 319 16.08 2a6cA 83 16.92 a.35.1.13 126236 2j3tD 219 17.47 1dkuA 317 19.07 c.61.1.2,c.61.1.2 34118,34119 2pi6A 361 19.94 2jbhA 225 21.58 1rqpA 299 22.96 b.141.1.1,c.132.1.1 97754,97755 1mi8A 158 23.23 b.86.1.2 91279 2ywkA 95 24.14 2plcA 274 24.90 c.1.18.2 29614 1vdmA 153 25.22 c.61.1.1 119994 3c7jA 237 25.96 2hcrA 326 27.69 1eovA 487 28.32 b.40.4.1,d.104.1.1 25239,40760 2aefA 234 29.48 1hgxA 183 31.35 c.61.1.1 34027 1eceA 358 31.48 c.1.8.3 28813 1vraB 215 31.52 2asbA 251 31.79 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1fsgA 233 31.84 c.61.1.1 34029 1s98A 107 32.18 b.124.1.1 105377 3by6A 126 32.22 1t6t1 118 35.50 1dmgA 225 35.60 c.22.1.1 31036 3bs5A 106 35.76 2f4nA 273 35.94 2e55A 208 36.06 2dpyA 438 36.45 2v95A 371 37.80 1i0lA 221 38.76 c.61.1.1 71096 1f28A 297 39.65 d.117.1.1 59608 2yzkA 178 41.01 1kgsA 225 41.14 a.4.6.1,c.23.1.1 68596,68597 2ek5A 129 41.41 2igbA 179 44.16 1zh5A 195 44.98 a.4.5.46,d.58.7.1 125073,125074 2dy0A 190 45.44 1wd5A 208 48.07 c.61.1.1 114524 1z7gA 217 49.71 c.61.1.1 124624 2yydA 345 49.83 1yxaA 398 49.91 2glwA 92 52.12 1at0 145 52.80 3dbwA 226 52.84 2gebA 185 53.53 1bkpA 278 53.54 d.117.1.1 41029 3bs7A 78 54.17 1tzfA 259 54.62 c.68.1.13 107476 1xm7A 195 56.18 d.159.1.8 115473 1jwoA 97 57.28 d.93.1.1 63310 1krhA 338 59.00 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1yioA 208 60.83 a.4.6.2,c.23.1.1 123326,123327 1pk1B 89 61.66 a.60.1.2 118712 2g8oA 264 62.46 d.117.1.1 134779 1mvoA 136 62.53 c.23.1.1 79513 2ps1A 226 63.33 3bofA 566 63.81 3b4dA 96 64.60 1l7bA 92 64.72 c.15.1.2 91053 1k2xB 143 64.78 1srrA 124 65.51 c.23.1.1 31110 2gcuA 245 65.78 1h9oA 112 66.05 d.93.1.1 60837 2d4wA 504 66.15 2g8mA 264 66.63 2di3A 239 69.85 1ypvA 313 71.83 2vdxA 373 72.36 1fi2A 201 72.67 b.82.1.2 59845 1s8nA 205 72.95 c.23.1.1 105374 1a3c 181 75.00 1at0A 145 75.63 b.86.1.1 28374 1ys7A 233 75.94 a.4.6.1,c.23.1.1 123961,123962 1ve2A 235 78.04 c.90.1.1 120008 2acfA 182 78.80 c.50.1.2 126547 2nlwA 105 78.85 2e5iA 124 79.44 1senA 164 81.14 c.47.1.1 105465 2bgiA 272 81.35 2pt5A 168 82.89 2b4wA 315 83.47 b.67.2.5 127866 2okfA 140 83.85 2qr3A 140 83.95 1w30A 201 84.46 c.61.1.1 114118 2a9oA 120 84.90 c.23.1.1 126444 1o4uA 285 87.36 c.1.17.1,d.41.2.1 86624,86625 2yzqA 282 87.59 2et1A 201 87.76 b.82.1.2 132351 1c9oA 66 88.08 b.40.4.5 25325 2ghpA 292 88.39 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1y4jA 284 89.53 d.169.1.7 122620 3dfrA 162 89.81 c.71.1.1 34880