# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg1A	92	4.36e-13		
1tp5A	119	4.39e-13	b.36.1.1	119305
2he2A	102	6.05e-13		
1g9oA	91	7.38e-13	b.36.1.1	60400
2ozfA	92	1.08e-12		
2he4A	90	1.27e-12		
2opgA	98	1.53e-12		
1qauA	112	1.56e-12	b.36.1.1	24779
2awxA	105	1.89e-12		
2fneA	117	2.32e-12	b.36.1.1	133813
2fe5A	94	2.61e-12	b.36.1.1	133323
2i1nA	102	3.37e-12		
2v90A	96	3.42e-12		
2iwnA	97	3.49e-12		
2qkvA	96	4.33e-12		
1nf3C	128	4.35e-12	b.36.1.1	85596
1n7eA	97	4.37e-12	b.36.1.1	91691
2jilA	97	5.29e-12		
2ocsA	88	5.34e-12		
2fcfA	103	5.48e-12	b.36.1.1	133267
2jikA	101	6.21e-12		
1kwaA	88	6.87e-12	b.36.1.1	24772
1qavA	90	6.93e-12	b.36.1.1	24777
2pa1A	87	9.15e-12		
2f5yA	91	1.05e-11	b.36.1.1	133015
2iwoA	120	1.12e-11		
1ihjA	98	1.22e-11	b.36.1.1	62382
2pktA	91	1.60e-11		
1q3oA	109	1.61e-11	b.36.1.1	95700
2uzcA	88	1.64e-11		
2egoA	96	1.78e-11		
2f0aA	98	1.79e-11	b.36.1.1	132661
2qt5A	200	2.14e-11		
2q3gA	89	2.24e-11		
2h2bA	107	2.24e-11		
2reyA	100	2.44e-11		
1x45A	98	3.06e-11	b.36.1.1	121679
1wf7A	103	4.03e-11	b.36.1.1	114577
2gzvA	114	4.87e-11		
2i04A	85	5.64e-11		
1r6jA	82	5.83e-11	b.36.1.1	97151
2q9vA	90	5.89e-11		
2vphA	100	7.84e-11		
1fc6A	388	9.39e-11	b.36.1.3,c.14.1.2	64738,64739
2eaqA	90	9.59e-11		
2h3lA	103	1.28e-10	b.36.1.1	136046
3bpuA	88	3.20e-10		
2rczA	81	4.70e-10		
1mfgA	95	5.25e-10	b.36.1.1	79043
1y8tA	324	2.17e-06	b.36.1.4,b.47.1.1	122763,122764
2z9iA	324	4.48e-06		
2p3wA	112	7.35e-06		
1te0A	318	8.56e-06	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	2.96e-05	b.36.1.4,b.47.1.1	73834,73835
1k32A	1045	0.000954	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.003341	c.14.1.2	66425
2i6vA	87	0.2939		
1l1qA	186	5.049	c.61.1.1	77653
2g8oA	264	7.445	d.117.1.1	134779
2g8mA	264	8.045		
2adzA	178	8.966	b.55.1.1	126599
1bkpA	278	9.655	d.117.1.1	41029
1ypvA	313	12.13		
2zbvA	263	13.13		
1zn8A	180	14.05	c.61.1.1	125376
2q6kA	283	15.35		
2cw5A	255	18.01		
1u9yA	284	19.37	c.61.1.2,c.61.1.2	119655,119656
1qqqA	264	20.06	d.117.1.1	40931
1y0bA	197	21.60	c.61.1.1	122476
1h5rA	293	22.45	c.68.1.6	65623
1w30A	201	23.30	c.61.1.1	114118
2aeeA	211	23.31	c.61.1.1	126620
1f28A	297	24.25	d.117.1.1	59608
3dahA	319	26.97		
1vctA	205	27.91	a.7.12.1,d.286.1.1	119986,119987
1h9oA	112	28.94	d.93.1.1	60837
2j3tD	219	30.44		
2jbhA	225	30.92		
1g2qA	187	31.05	c.61.1.1	65117
2j69A	695	32.53		
1mi8A	158	34.27	b.86.1.2	91279
2jsnA	96	34.65		
2igbA	179	39.61		
1v9sA	208	39.99	c.61.1.1	119894
2v40A	459	44.59		
2yzkA	178	45.00		
2pezA	179	46.08		
1cjbA	231	46.52	c.61.1.1	34079
2p1zA	180	46.73		
2z1cA	75	47.55		
1ev5A	264	48.27	d.117.1.1	40935
2zmvA	227	48.30		
2asbA	251	51.10	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
1a3c	181	51.67		
1dmgA	225	55.10	c.22.1.1	31036
1dkuA	317	56.08	c.61.1.2,c.61.1.2	34118,34119
1eovA	487	56.98	b.40.4.1,d.104.1.1	25239,40760
1p2fA	220	57.54	a.4.6.1,c.23.1.1	87720,87721
1lvwA	295	58.18	c.68.1.6	84723
1s98A	107	59.12	b.124.1.1	105377
1b5eA	246	59.60	d.117.1.1	41056
1fi2A	201	64.74	b.82.1.2	59845
2ywkA	95	68.68		
3bhxA	709	68.83		
2g5cA	281	75.71	a.100.1.12,c.2.1.6	134646,134647
2r8rA	228	77.19		
1pujA	282	79.78	c.37.1.8	88294
1h70A	255	83.21	d.126.1.3	60711
1f5nA	592	87.60	a.114.1.1,c.37.1.8	19077,32152
2og9A	393	87.80		
1tzfA	259	88.92	c.68.1.13	107476