# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qg1A 92 3.49e-13 1tp5A 119 4.88e-13 b.36.1.1 119305 2he2A 102 5.92e-13 1g9oA 91 8.45e-13 b.36.1.1 60400 2ozfA 92 1.27e-12 2opgA 98 1.38e-12 2he4A 90 1.50e-12 1qauA 112 1.72e-12 b.36.1.1 24779 2awxA 105 1.92e-12 2fe5A 94 2.06e-12 b.36.1.1 133323 2fneA 117 2.23e-12 b.36.1.1 133813 2i1nA 102 3.01e-12 1nf3C 128 3.29e-12 b.36.1.1 85596 2iwnA 97 3.34e-12 2v90A 96 3.52e-12 1n7eA 97 3.71e-12 b.36.1.1 91691 2fcfA 103 3.80e-12 b.36.1.1 133267 2qkvA 96 4.20e-12 2jilA 97 4.78e-12 2ocsA 88 4.84e-12 2jikA 101 5.01e-12 1kwaA 88 5.25e-12 b.36.1.1 24772 1qavA 90 6.60e-12 b.36.1.1 24777 2f5yA 91 8.93e-12 b.36.1.1 133015 2pa1A 87 9.38e-12 2iwoA 120 9.57e-12 1ihjA 98 1.22e-11 b.36.1.1 62382 1q3oA 109 1.62e-11 b.36.1.1 95700 2egoA 96 1.72e-11 2f0aA 98 1.73e-11 b.36.1.1 132661 2reyA 100 1.87e-11 2pktA 91 1.88e-11 2uzcA 88 1.89e-11 2qt5A 200 1.92e-11 2q3gA 89 2.29e-11 1x45A 98 2.36e-11 b.36.1.1 121679 2h2bA 107 2.47e-11 2gzvA 114 4.34e-11 1wf7A 103 4.52e-11 b.36.1.1 114577 2q9vA 90 4.73e-11 2i04A 85 4.91e-11 1r6jA 82 5.51e-11 b.36.1.1 97151 1fc6A 388 7.78e-11 b.36.1.3,c.14.1.2 64738,64739 2vphA 100 1.01e-10 2eaqA 90 1.02e-10 2h3lA 103 1.39e-10 b.36.1.1 136046 1mfgA 95 4.19e-10 b.36.1.1 79043 3bpuA 88 4.31e-10 2rczA 81 4.73e-10 1y8tA 324 4.00e-06 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 7.30e-06 2p3wA 112 1.05e-05 1te0A 318 1.42e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 3.51e-05 b.36.1.4,b.47.1.1 73834,73835 1k32A 1045 0.002778 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.003324 c.14.1.2 66425 2i6vA 87 0.8147 1l1qA 186 4.239 c.61.1.1 77653 2adzA 178 6.315 b.55.1.1 126599 2g8oA 264 7.179 d.117.1.1 134779 2g8mA 264 7.599 1bkpA 278 8.686 d.117.1.1 41029 2zbvA 263 13.09 1zn8A 180 13.40 c.61.1.1 125376 1ypvA 313 17.98 2cw5A 255 18.64 1qqqA 264 18.80 d.117.1.1 40931 1vctA 205 22.00 a.7.12.1,d.286.1.1 119986,119987 2q6kA 283 23.51 1w30A 201 24.01 c.61.1.1 114118 1f28A 297 25.86 d.117.1.1 59608 1v9sA 208 26.89 c.61.1.1 119894 1h5rA 293 27.72 c.68.1.6 65623 1g2qA 187 30.64 c.61.1.1 65117 1u9yA 284 31.02 c.61.1.2,c.61.1.2 119655,119656 2aeeA 211 32.27 c.61.1.1 126620 1y0bA 197 32.94 c.61.1.1 122476 2pezA 179 34.29 2i62A 265 36.51 1mi8A 158 36.63 b.86.1.2 91279 2jbhA 225 41.86 2igbA 179 42.21 1fi2A 201 43.63 b.82.1.2 59845 2jsnA 96 44.69 2j3tD 219 44.82 1ev5A 264 46.82 d.117.1.1 40935 2yzkA 178 47.42 3dahA 319 47.47 2j69A 695 52.81 1dmgA 225 53.96 c.22.1.1 31036 2og9A 393 54.44 1b5eA 246 57.48 d.117.1.1 41056 1f5nA 592 58.91 a.114.1.1,c.37.1.8 19077,32152 2p1zA 180 59.41 1zlqA 502 62.54 c.94.1.1 125253 1a3c 181 63.36 1cjbA 231 64.56 c.61.1.1 34079 3bhxA 709 69.30 1lvwA 295 71.36 c.68.1.6 84723 1eovA 487 71.38 b.40.4.1,d.104.1.1 25239,40760 1bd3A 243 72.66 c.61.1.1 34098 2et1A 201 73.87 b.82.1.2 132351 1tzfA 259 74.38 c.68.1.13 107476 2guiA 194 74.74 c.55.3.5 135737 1pujA 282 78.77 c.37.1.8 88294 2z1cA 75 80.03 1guqA 348 80.83 d.13.1.2,d.13.1.2 37522,37523 1l5jA 865 81.19 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1l3kA 196 82.73 d.58.7.1,d.58.7.1 73539,73540 2asbA 251 83.00 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1vs1A 276 83.20 2r8rA 228 88.22 1h9oA 112 89.61 d.93.1.1 60837