# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qg1A 92 6.70e-13 1tp5A 119 8.77e-13 b.36.1.1 119305 2he2A 102 1.10e-12 1g9oA 91 1.66e-12 b.36.1.1 60400 2ozfA 92 2.08e-12 2he4A 90 2.60e-12 1qauA 112 2.72e-12 b.36.1.1 24779 2opgA 98 2.75e-12 2awxA 105 3.38e-12 2fe5A 94 3.89e-12 b.36.1.1 133323 2fneA 117 4.22e-12 b.36.1.1 133813 2i1nA 102 4.89e-12 2iwnA 97 5.83e-12 1nf3C 128 6.12e-12 b.36.1.1 85596 2v90A 96 6.47e-12 1n7eA 97 6.75e-12 b.36.1.1 91691 2fcfA 103 6.77e-12 b.36.1.1 133267 2qkvA 96 7.25e-12 2ocsA 88 8.77e-12 2jilA 97 9.64e-12 1qavA 90 9.79e-12 b.36.1.1 24777 1kwaA 88 1.06e-11 b.36.1.1 24772 2jikA 101 1.07e-11 2f5yA 91 1.51e-11 b.36.1.1 133015 2iwoA 120 1.64e-11 2pa1A 87 1.85e-11 1ihjA 98 2.05e-11 b.36.1.1 62382 2egoA 96 2.96e-11 2qt5A 200 3.05e-11 1q3oA 109 3.09e-11 b.36.1.1 95700 2f0aA 98 3.11e-11 b.36.1.1 132661 2uzcA 88 3.27e-11 2pktA 91 3.42e-11 2reyA 100 3.81e-11 1x45A 98 3.93e-11 b.36.1.1 121679 2q3gA 89 4.06e-11 2h2bA 107 4.52e-11 1wf7A 103 6.69e-11 b.36.1.1 114577 2q9vA 90 7.94e-11 2gzvA 114 8.30e-11 2i04A 85 9.50e-11 1r6jA 82 9.85e-11 b.36.1.1 97151 1fc6A 388 1.36e-10 b.36.1.3,c.14.1.2 64738,64739 2eaqA 90 1.65e-10 2vphA 100 1.86e-10 2h3lA 103 2.12e-10 b.36.1.1 136046 3bpuA 88 6.00e-10 2rczA 81 7.04e-10 1mfgA 95 7.43e-10 b.36.1.1 79043 1y8tA 324 4.52e-06 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 8.38e-06 2p3wA 112 1.45e-05 1te0A 318 1.70e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 4.96e-05 b.36.1.4,b.47.1.1 73834,73835 1k32A 1045 0.002796 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.003869 c.14.1.2 66425 2i6vA 87 0.7621 1l1qA 186 4.132 c.61.1.1 77653 2g8oA 264 8.057 d.117.1.1 134779 2adzA 178 8.267 b.55.1.1 126599 2g8mA 264 8.330 1bkpA 278 9.856 d.117.1.1 41029 1zn8A 180 13.06 c.61.1.1 125376 2zbvA 263 13.31 1ypvA 313 13.79 1y0bA 197 14.83 c.61.1.1 122476 2aeeA 211 14.93 c.61.1.1 126620 1qqqA 264 18.44 d.117.1.1 40931 2cw5A 255 20.70 2q6kA 283 21.76 1vctA 205 22.60 a.7.12.1,d.286.1.1 119986,119987 1w30A 201 23.55 c.61.1.1 114118 1u9yA 284 24.86 c.61.1.2,c.61.1.2 119655,119656 1f28A 297 28.49 d.117.1.1 59608 1h5rA 293 30.82 c.68.1.6 65623 1g2qA 187 33.62 c.61.1.1 65117 1v9sA 208 33.86 c.61.1.1 119894 2j69A 695 34.80 2jbhA 225 36.62 2p1zA 180 37.34 1mi8A 158 37.47 b.86.1.2 91279 2igbA 179 37.67 3dahA 319 38.22 1h9oA 112 42.90 d.93.1.1 60837 1ev5A 264 44.24 d.117.1.1 40935 2i62A 265 44.99 2yzkA 178 44.99 1fi2A 201 45.52 b.82.1.2 59845 1f5nA 592 46.91 a.114.1.1,c.37.1.8 19077,32152 1b5eA 246 53.63 d.117.1.1 41056 1l3kA 196 55.77 d.58.7.1,d.58.7.1 73539,73540 2pezA 179 55.95 2og9A 393 56.57 1a3c 181 56.77 2j3tD 219 60.09 1cjbA 231 60.11 c.61.1.1 34079 1dmgA 225 60.29 c.22.1.1 31036 1lvwA 295 61.49 c.68.1.6 84723 2asbA 251 64.33 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2v40A 459 64.59 2et1A 201 67.81 b.82.1.2 132351 1lh0A 213 69.83 c.61.1.1 73896 1pujA 282 70.30 c.37.1.8 88294 2jsnA 96 72.31 1dkuA 317 73.49 c.61.1.2,c.61.1.2 34118,34119 1vs1A 276 77.19 1tzfA 259 80.94 c.68.1.13 107476 2zivA 311 81.83 2g5cA 281 82.93 a.100.1.12,c.2.1.6 134646,134647 1oroA 213 84.10 c.61.1.1 34093 3bs5A 106 84.13 1guqA 348 84.29 d.13.1.2,d.13.1.2 37522,37523 2r8rA 228 88.23 2zmvA 227 88.35 1bd3A 243 88.82 c.61.1.1 34098 2r2aA 199 89.33