# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg1A	92	4.87e-12		
2he2A	102	1.01e-11		
1g9oA	91	1.17e-11	b.36.1.1	60400
2ozfA	92	1.43e-11		
1tp5A	119	1.61e-11	b.36.1.1	119305
2he4A	90	2.11e-11		
2awxA	105	2.17e-11		
2fneA	117	2.31e-11	b.36.1.1	133813
2fcfA	103	2.41e-11	b.36.1.1	133267
2opgA	98	2.48e-11		
2fe5A	94	2.83e-11	b.36.1.1	133323
1qavA	90	3.10e-11	b.36.1.1	24777
2jikA	101	3.36e-11		
2v90A	96	3.73e-11		
1ihjA	98	3.94e-11	b.36.1.1	62382
2i1nA	102	4.35e-11		
2jilA	97	4.91e-11		
1qauA	112	5.06e-11	b.36.1.1	24779
2iwnA	97	5.17e-11		
2f5yA	91	5.65e-11	b.36.1.1	133015
1n7eA	97	5.67e-11	b.36.1.1	91691
2ocsA	88	5.80e-11		
2qkvA	96	6.35e-11		
1kwaA	88	7.65e-11	b.36.1.1	24772
2pa1A	87	8.55e-11		
1nf3C	128	8.95e-11	b.36.1.1	85596
2uzcA	88	9.19e-11		
2h2bA	107	9.28e-11		
1x45A	98	9.40e-11	b.36.1.1	121679
2f0aA	98	9.60e-11	b.36.1.1	132661
2iwoA	120	1.16e-10		
2pktA	91	1.17e-10		
2q9vA	90	1.19e-10		
2q3gA	89	1.22e-10		
2reyA	100	1.32e-10		
1wf7A	103	1.41e-10	b.36.1.1	114577
2i04A	85	1.64e-10		
1q3oA	109	2.05e-10	b.36.1.1	95700
2gzvA	114	2.14e-10		
1r6jA	82	2.46e-10	b.36.1.1	97151
2egoA	96	2.54e-10		
2vphA	100	3.24e-10		
2h3lA	103	4.29e-10	b.36.1.1	136046
2qt5A	200	4.48e-10		
1mfgA	95	9.58e-10	b.36.1.1	79043
3bpuA	88	1.56e-09		
1fc6A	388	2.57e-09	b.36.1.3,c.14.1.2	64738,64739
2eaqA	90	4.22e-09		
2rczA	81	1.43e-08		
1y8tA	324	1.96e-05	b.36.1.4,b.47.1.1	122763,122764
2z9iA	324	2.09e-05		
2p3wA	112	2.40e-05		
1lcyA	325	3.58e-05	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	7.41e-05	b.36.1.4,b.47.1.1	112400,112401
1k32A	1045	0.006208	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.1065	c.14.1.2	66425
2i6vA	87	0.1875		
2zmvA	227	23.00		
2j3tD	219	26.51		
1ypvA	313	28.81		
1vctA	205	36.37	a.7.12.1,d.286.1.1	119986,119987
2ek5A	129	37.77		
1o57A	291	37.89	a.4.5.40,c.61.1.1	92483,92484
1qqqA	264	43.02	d.117.1.1	40931
2pfuA	99	45.63		
2r8rA	228	51.45		
2g8oA	264	51.76	d.117.1.1	134779
1l3kA	196	56.96	d.58.7.1,d.58.7.1	73539,73540
1pk1B	89	63.02	a.60.1.2	118712
1bkpA	278	64.88	d.117.1.1	41029
2g8mA	264	65.79		
1mi8A	158	67.40	b.86.1.2	91279
2g5cA	281	67.92	a.100.1.12,c.2.1.6	134646,134647
1dmgA	225	68.44	c.22.1.1	31036
2gt1A	326	76.59		
2igbA	179	80.33		
2vdxA	373	80.65		
2v95A	371	81.87		
3bs5A	106	84.15		
2dt8A	280	86.81		
1ik9A	213	87.53	b.59.1.1,h.1.11.1	66176,66177
3by6A	126	87.65