# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tp5A	119	5.05e-12	b.36.1.1	119305
2he2A	102	5.08e-12		
2qg1A	92	6.73e-12		
1g9oA	91	8.52e-12	b.36.1.1	60400
2ozfA	92	1.37e-11		
2awxA	105	1.38e-11		
2he4A	90	1.70e-11		
2opgA	98	1.84e-11		
1qauA	112	1.94e-11	b.36.1.1	24779
2fneA	117	2.92e-11	b.36.1.1	133813
2iwnA	97	3.04e-11		
2fe5A	94	3.14e-11	b.36.1.1	133323
2i1nA	102	4.18e-11		
2jilA	97	4.22e-11		
2v90A	96	4.25e-11		
2qkvA	96	4.28e-11		
1nf3C	128	4.32e-11	b.36.1.1	85596
2fcfA	103	4.62e-11	b.36.1.1	133267
2ocsA	88	5.24e-11		
2jikA	101	5.59e-11		
1kwaA	88	7.55e-11	b.36.1.1	24772
2iwoA	120	7.69e-11		
1n7eA	97	9.17e-11	b.36.1.1	91691
1qavA	90	9.17e-11	b.36.1.1	24777
2f5yA	91	1.04e-10	b.36.1.1	133015
1ihjA	98	1.10e-10	b.36.1.1	62382
2f0aA	98	1.52e-10	b.36.1.1	132661
2pa1A	87	1.55e-10		
2egoA	96	1.63e-10		
2reyA	100	1.64e-10		
1q3oA	109	1.64e-10	b.36.1.1	95700
2pktA	91	1.99e-10		
2q3gA	89	2.06e-10		
2uzcA	88	2.08e-10		
2h2bA	107	2.23e-10		
2qt5A	200	2.83e-10		
2gzvA	114	3.82e-10		
2q9vA	90	4.01e-10		
1r6jA	82	4.47e-10	b.36.1.1	97151
1x45A	98	4.48e-10	b.36.1.1	121679
2i04A	85	5.44e-10		
1wf7A	103	5.64e-10	b.36.1.1	114577
2vphA	100	6.81e-10		
2h3lA	103	1.03e-09	b.36.1.1	136046
2eaqA	90	1.17e-09		
1fc6A	388	1.53e-09	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	2.64e-09		
1mfgA	95	2.73e-09	b.36.1.1	79043
2rczA	81	3.10e-09		
1y8tA	324	1.04e-05	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.72e-05		
2z9iA	324	1.82e-05		
1te0A	318	2.94e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	8.84e-05	b.36.1.4,b.47.1.1	73834,73835
1k32A	1045	0.006031	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.007812	c.14.1.2	66425
2i6vA	87	0.2748		
2g8oA	264	7.771	d.117.1.1	134779
2g8mA	264	8.102		
1y0bA	197	8.746	c.61.1.1	122476
1l1qA	186	9.626	c.61.1.1	77653
2aeeA	211	10.40	c.61.1.1	126620
1zn8A	180	12.44	c.61.1.1	125376
1ypvA	313	13.84		
2q6kA	283	14.63		
2zbvA	263	14.79		
1bkpA	278	16.12	d.117.1.1	41029
1qqqA	264	16.17	d.117.1.1	40931
1l3kA	196	18.12	d.58.7.1,d.58.7.1	73539,73540
1h9oA	112	21.34	d.93.1.1	60837
2adzA	178	21.58	b.55.1.1	126599
2jsnA	96	21.98		
2j69A	695	23.11		
2cw5A	255	24.22		
2z1cA	75	24.25		
1g2qA	187	26.22	c.61.1.1	65117
1mi8A	158	27.74	b.86.1.2	91279
1vchA	175	28.30	c.61.1.1	119980
2jbhA	225	28.94		
2p1zA	180	30.30		
1h5rA	293	32.50	c.68.1.6	65623
2yzkA	178	34.65		
1vctA	205	35.97	a.7.12.1,d.286.1.1	119986,119987
2igbA	179	39.67		
1w30A	201	41.49	c.61.1.1	114118
1ev5A	264	42.00	d.117.1.1	40935
2asbA	251	42.47	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
2zmvA	227	42.82		
2j3tD	219	46.28		
1f28A	297	46.65	d.117.1.1	59608
1cjbA	231	46.83	c.61.1.1	34079
1a3c	181	47.55		
1i0lA	221	50.30	c.61.1.1	71096
1u9yA	284	52.02	c.61.1.2,c.61.1.2	119655,119656
3bs5A	106	55.39		
3bbdA	205	57.53		
2v40A	459	59.84		
2nwhA	317	60.23		
1dmgA	225	60.28	c.22.1.1	31036
1f5nA	592	63.93	a.114.1.1,c.37.1.8	19077,32152
1fxlA	167	65.44	d.58.7.1,d.58.7.1	39183,39184
2ywkA	95	68.00		
1z7xW	461	70.13	c.10.1.1	124675
1a3cA	181	70.96	c.61.1.1	34095
1eovA	487	71.44	b.40.4.1,d.104.1.1	25239,40760
2dy0A	190	79.63		
1fsgA	233	83.29	c.61.1.1	34029
1zh5A	195	83.65	a.4.5.46,d.58.7.1	125073,125074
2plcA	274	87.06	c.1.18.2	29614
1tzfA	259	89.51	c.68.1.13	107476