# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 4.25e-15 2qg1A 92 9.18e-15 1tp5A 119 1.00e-14 b.36.1.1 119305 1g9oA 91 1.94e-14 b.36.1.1 60400 2jilA 97 2.59e-14 2iwoA 120 2.64e-14 2awxA 105 3.26e-14 2ozfA 92 3.51e-14 1qauA 112 4.28e-14 b.36.1.1 24779 2he4A 90 4.41e-14 1qavA 90 4.51e-14 b.36.1.1 24777 2opgA 98 4.70e-14 1kwaA 88 5.14e-14 b.36.1.1 24772 2iwnA 97 8.67e-14 2fe5A 94 9.13e-14 b.36.1.1 133323 2qkvA 96 1.17e-13 2fcfA 103 1.24e-13 b.36.1.1 133267 2i1nA 102 1.30e-13 2v90A 96 1.69e-13 2jikA 101 1.72e-13 2ocsA 88 1.75e-13 2fneA 117 1.78e-13 b.36.1.1 133813 1n7eA 97 1.87e-13 b.36.1.1 91691 1nf3C 128 3.62e-13 b.36.1.1 85596 1ihjA 98 3.88e-13 b.36.1.1 62382 2pktA 91 4.11e-13 2f5yA 91 4.36e-13 b.36.1.1 133015 1wf7A 103 4.44e-13 b.36.1.1 114577 2qt5A 200 5.72e-13 2pa1A 87 6.62e-13 1q3oA 109 6.90e-13 b.36.1.1 95700 2egoA 96 6.95e-13 2reyA 100 7.05e-13 2uzcA 88 1.01e-12 2q3gA 89 1.02e-12 2gzvA 114 1.05e-12 1x45A 98 1.17e-12 b.36.1.1 121679 2h2bA 107 1.39e-12 2f0aA 98 1.50e-12 b.36.1.1 132661 2q9vA 90 1.67e-12 1r6jA 82 1.74e-12 b.36.1.1 97151 2i04A 85 2.30e-12 2vphA 100 2.75e-12 2eaqA 90 3.50e-12 2h3lA 103 7.86e-12 b.36.1.1 136046 2rczA 81 2.02e-11 1mfgA 95 2.26e-11 b.36.1.1 79043 3bpuA 88 2.82e-11 1fc6A 388 6.02e-09 b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.85e-06 b.36.1.4,b.47.1.1 73834,73835 2p3wA 112 2.32e-06 1te0A 318 0.000386 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.000807 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 0.05376 1j7xA 302 0.1193 c.14.1.2 66425 1l1qA 186 0.3203 c.61.1.1 77653 2i6vA 87 0.3379 2aeeA 211 1.060 c.61.1.1 126620 2gj2A 85 2.778 3bpkA 206 2.791 2dkaA 544 3.254 1g2qA 187 3.296 c.61.1.1 65117 1y0bA 197 3.624 c.61.1.1 122476 2vesA 299 3.714 1vf8A 377 3.939 c.1.8.5,d.26.3.1 120029,120030 2nt0A 497 4.778 b.71.1.2,c.1.8.3 138561,138562 1zn8A 180 6.566 c.61.1.1 125376 1l3kA 196 7.498 d.58.7.1,d.58.7.1 73539,73540 1oqvA 192 7.864 d.24.1.2 87320 1zunB 434 8.714 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2adzA 178 9.675 b.55.1.1 126599 2cmgA 262 12.99 1xrsA 516 13.12 c.1.19.4 115883 2zbvA 263 13.86 1yp2A 451 14.34 b.81.1.4,c.68.1.6 123798,123799 1vctA 205 14.58 a.7.12.1,d.286.1.1 119986,119987 2asbA 251 14.94 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2v40A 459 15.46 1z45A 699 15.48 b.30.5.4,c.2.1.2 124427,124428 1p2fA 220 15.49 a.4.6.1,c.23.1.1 87720,87721 1vchA 175 17.63 c.61.1.1 119980 2epgA 487 18.56 1w30A 201 20.40 c.61.1.1 114118 2r3sA 335 20.77 1h9oA 112 20.85 d.93.1.1 60837 1p42A 270 22.42 d.14.1.7,d.14.1.7 87754,87755 2p1zA 180 22.84 1c0pA 363 23.26 c.4.1.2,d.16.1.3 30647,37934 3b3qE 197 25.00 1b5eA 246 25.11 d.117.1.1 41056 1o7fA 469 25.65 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2dx0A 138 27.28 2og9A 393 28.06 1l5jA 865 28.30 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1a3c 181 28.49 1f1gA 154 28.77 b.1.8.1 76153 2rebA 352 32.31 c.37.1.11,d.48.1.1 32282,38767 1oj7A 408 33.45 e.22.1.2 103971 2jbhA 225 34.26 2vhsA 217 35.23 1hyuA 521 35.43 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1zh5A 195 35.71 a.4.5.46,d.58.7.1 125073,125074 1jwoA 97 37.17 d.93.1.1 63310 1yxaA 398 37.65 1o57A 291 38.13 a.4.5.40,c.61.1.1 92483,92484 2g5cA 281 39.09 a.100.1.12,c.2.1.6 134646,134647 1jdwA 423 39.22 d.126.1.2 41129 2oqhA 385 40.11 2reeA 224 40.67 1c4rA 182 40.68 b.29.1.4 24229 2yzkA 178 42.76 1i0lA 221 43.40 c.61.1.1 71096 2jsnA 96 43.65 1c3pA 375 44.23 c.42.1.2 32606 1u9yA 284 45.48 c.61.1.2,c.61.1.2 119655,119656 1se8A 301 45.54 b.40.4.3 105448 2agmA 167 46.20 1jr7A 311 47.97 b.82.2.3 63255 2imhA 231 49.47 3b9gA 328 51.88 2f4nA 273 52.40 1arb 268 52.93 2r0cA 549 54.12 1h5rA 293 54.56 c.68.1.6 65623 1n4wA 504 56.40 c.3.1.2,d.16.1.1 91676,91677 1cozA 129 58.12 c.26.1.2 31598 2qh8A 302 59.08 2bw8A 227 60.13 b.29.1.11 129324 2f8lA 344 61.35 c.66.1.45 133132 1ofdA 1520 61.39 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1qo8A 566 61.43 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1n7hA 381 62.16 c.2.1.2 80250 1sfsA 240 63.62 c.1.8.8 98846 2ywkA 95 63.66 3bs5A 106 63.92 1rqpA 299 64.27 b.141.1.1,c.132.1.1 97754,97755 3bbdA 205 64.90 1fi2A 201 65.85 b.82.1.2 59845 1j7jA 178 66.62 c.61.1.1 84131 1w9pA 433 67.27 c.1.8.5,d.26.3.1 114412,114413 2gebA 185 68.18 2pfsA 150 68.77 1sw2A 275 70.65 c.94.1.1 106064 1a3cA 181 72.57 c.61.1.1 34095 1pujA 282 73.14 c.37.1.8 88294 1iq8A 582 74.55 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 3cfuA 159 75.33 2go3A 267 75.38 d.14.1.7,d.14.1.7 135422,135423 1wqaA 455 76.68 1ed8A 449 76.69 c.76.1.1 34988 1byi 224 78.48 2z1cA 75 78.79 3tmkA 216 78.81 c.37.1.1 31920 2j3tD 219 79.30 1id1A 153 79.48 c.2.1.9 62286 1m2tB 263 81.86 b.42.2.1,b.42.2.1 84762,84763 1zynA 202 81.87 c.47.1.2,c.47.1.2 125838,125839 2d4wA 504 82.65 2ganA 190 82.96 d.108.1.1 134889 2qqjA 325 83.34 2po3A 424 83.78 1heiA 451 84.52 c.37.1.14,c.37.1.14 32463,32464 1y44A 320 85.19 d.157.1.7 122608 2yv5A 302 85.46 1yioA 208 86.23 a.4.6.2,c.23.1.1 123326,123327 2gq1A 332 86.93 2guiA 194 88.45 c.55.3.5 135737