# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 2.28e-12 b.36.1.1 119305 2qg1A 92 2.33e-12 2he2A 102 2.38e-12 1g9oA 91 4.38e-12 b.36.1.1 60400 2awxA 105 4.94e-12 2ozfA 92 6.28e-12 2he4A 90 7.28e-12 1qauA 112 8.64e-12 b.36.1.1 24779 2opgA 98 8.66e-12 2fe5A 94 9.83e-12 b.36.1.1 133323 2fneA 117 1.30e-11 b.36.1.1 133813 2iwnA 97 1.44e-11 2qkvA 96 1.66e-11 2i1nA 102 1.68e-11 2fcfA 103 1.84e-11 b.36.1.1 133267 2jilA 97 1.86e-11 1nf3C 128 2.08e-11 b.36.1.1 85596 2jikA 101 2.09e-11 2ocsA 88 2.49e-11 2v90A 96 2.90e-11 1kwaA 88 2.92e-11 b.36.1.1 24772 2iwoA 120 4.06e-11 1qavA 90 4.11e-11 b.36.1.1 24777 1n7eA 97 4.29e-11 b.36.1.1 91691 2f5yA 91 5.11e-11 b.36.1.1 133015 1ihjA 98 5.30e-11 b.36.1.1 62382 2reyA 100 6.83e-11 2f0aA 98 7.33e-11 b.36.1.1 132661 1q3oA 109 7.58e-11 b.36.1.1 95700 2egoA 96 7.99e-11 2pa1A 87 9.92e-11 2h2bA 107 1.14e-10 2pktA 91 1.16e-10 1x45A 98 1.26e-10 b.36.1.1 121679 2qt5A 200 1.47e-10 2q3gA 89 1.47e-10 2uzcA 88 1.66e-10 1r6jA 82 2.16e-10 b.36.1.1 97151 2q9vA 90 2.23e-10 2gzvA 114 2.58e-10 1wf7A 103 2.88e-10 b.36.1.1 114577 2i04A 85 3.50e-10 2h3lA 103 5.06e-10 b.36.1.1 136046 2vphA 100 5.95e-10 2eaqA 90 6.84e-10 1fc6A 388 9.69e-10 b.36.1.3,c.14.1.2 64738,64739 1mfgA 95 1.26e-09 b.36.1.1 79043 3bpuA 88 1.55e-09 2rczA 81 2.12e-09 1y8tA 324 1.19e-05 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 1.57e-05 2z9iA 324 2.06e-05 1te0A 318 3.35e-05 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 9.83e-05 b.36.1.4,b.47.1.1 73834,73835 1j7xA 302 0.007357 c.14.1.2 66425 1k32A 1045 0.009600 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.7666 1l1qA 186 6.767 c.61.1.1 77653 1y0bA 197 7.459 c.61.1.1 122476 2aeeA 211 9.092 c.61.1.1 126620 1zn8A 180 11.34 c.61.1.1 125376 2g8oA 264 11.49 d.117.1.1 134779 2g8mA 264 11.88 2adzA 178 14.14 b.55.1.1 126599 1vctA 205 14.34 a.7.12.1,d.286.1.1 119986,119987 1g2qA 187 14.45 c.61.1.1 65117 1ypvA 313 21.14 1qqqA 264 25.10 d.117.1.1 40931 2q6kA 283 26.31 1bkpA 278 28.39 d.117.1.1 41029 1h9oA 112 29.49 d.93.1.1 60837 2jbhA 225 29.82 2cw5A 255 29.84 2zbvA 263 30.45 1mi8A 158 31.17 b.86.1.2 91279 2asbA 251 32.95 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1w30A 201 36.78 c.61.1.1 114118 2igbA 179 38.65 2p1zA 180 39.40 2i62A 265 42.24 1l3kA 196 43.45 d.58.7.1,d.58.7.1 73539,73540 2og9A 393 46.24 2yzkA 178 46.36 3bs5A 106 50.26 1f28A 297 51.20 d.117.1.1 59608 1cjbA 231 54.26 c.61.1.1 34079 1h5rA 293 54.39 c.68.1.6 65623 1a3c 181 56.27 2j69A 695 56.90 1i0lA 221 57.97 c.61.1.1 71096 1f5nA 592 58.77 a.114.1.1,c.37.1.8 19077,32152 1lh0A 213 59.69 c.61.1.1 73896 1tzfA 259 61.63 c.68.1.13 107476 1vchA 175 65.55 c.61.1.1 119980 2v40A 459 68.88 2zmvA 227 70.61 1dmgA 225 74.13 c.22.1.1 31036 2j3tD 219 76.16 1u9yA 284 77.04 c.61.1.2,c.61.1.2 119655,119656 1ev5A 264 77.29 d.117.1.1 40935 2dy0A 190 77.95 2z1cA 75 79.24 1fi2A 201 82.32 b.82.1.2 59845 1ua4A 455 86.05 c.72.1.3 99128 1pk1B 89 87.83 a.60.1.2 118712 2jsnA 96 88.62