# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	1.01e-13		
2qg1A	92	1.08e-13		
1tp5A	119	1.17e-13	b.36.1.1	119305
1g9oA	91	2.46e-13	b.36.1.1	60400
1qauA	112	2.62e-13	b.36.1.1	24779
2ozfA	92	3.20e-13		
2awxA	105	3.21e-13		
2he4A	90	3.68e-13		
2opgA	98	4.53e-13		
2fe5A	94	6.68e-13	b.36.1.1	133323
2qkvA	96	8.48e-13		
2fneA	117	9.57e-13	b.36.1.1	133813
1nf3C	128	1.03e-12	b.36.1.1	85596
2i1nA	102	1.10e-12		
2jilA	97	1.18e-12		
2iwnA	97	1.20e-12		
1n7eA	97	1.23e-12	b.36.1.1	91691
2fcfA	103	1.24e-12	b.36.1.1	133267
2jikA	101	1.46e-12		
2ocsA	88	1.55e-12		
1kwaA	88	1.62e-12	b.36.1.1	24772
2v90A	96	1.65e-12		
1qavA	90	2.01e-12	b.36.1.1	24777
2iwoA	120	2.52e-12		
1ihjA	98	3.00e-12	b.36.1.1	62382
2f5yA	91	3.09e-12	b.36.1.1	133015
2pa1A	87	4.19e-12		
2egoA	96	4.65e-12		
1x45A	98	4.68e-12	b.36.1.1	121679
2f0aA	98	4.75e-12	b.36.1.1	132661
2reyA	100	5.53e-12		
1q3oA	109	6.04e-12	b.36.1.1	95700
2pktA	91	7.54e-12		
2qt5A	200	7.78e-12		
1wf7A	103	8.82e-12	b.36.1.1	114577
2uzcA	88	8.83e-12		
2h2bA	107	1.02e-11		
2q3gA	89	1.12e-11		
2q9vA	90	1.15e-11		
1r6jA	82	1.74e-11	b.36.1.1	97151
2i04A	85	2.04e-11		
2gzvA	114	2.16e-11		
2eaqA	90	2.33e-11		
2vphA	100	3.62e-11		
1fc6A	388	4.91e-11	b.36.1.3,c.14.1.2	64738,64739
2h3lA	103	4.96e-11	b.36.1.1	136046
2rczA	81	6.31e-11		
3bpuA	88	1.72e-10		
1mfgA	95	1.92e-10	b.36.1.1	79043
1y8tA	324	3.76e-06	b.36.1.4,b.47.1.1	122763,122764
2z9iA	324	7.16e-06		
1te0A	318	1.06e-05	b.36.1.4,b.47.1.1	112400,112401
2p3wA	112	1.17e-05		
1lcyA	325	3.86e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.001800	c.14.1.2	66425
1k32A	1045	0.006338	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	1.689	b.55.1.1	126599
2i6vA	87	1.760		
2g8oA	264	12.17	d.117.1.1	134779
1l3kA	196	14.23	d.58.7.1,d.58.7.1	73539,73540
1bkpA	278	14.33	d.117.1.1	41029
2g8mA	264	14.67		
1l1qA	186	15.19	c.61.1.1	77653
1f28A	297	18.85	d.117.1.1	59608
1qqqA	264	20.76	d.117.1.1	40931
1vctA	205	26.09	a.7.12.1,d.286.1.1	119986,119987
2cw5A	255	26.43		
1w30A	201	27.64	c.61.1.1	114118
2q6kA	283	29.38		
2zbvA	263	30.82		
1ev5A	264	32.30	d.117.1.1	40935
2og9A	393	33.91		
1g2qA	187	42.92	c.61.1.1	65117
2jbhA	225	49.12		
1mi8A	158	50.08	b.86.1.2	91279
1fxlA	167	51.21	d.58.7.1,d.58.7.1	39183,39184
2igbA	179	52.50		
2i62A	265	56.23		
2zmvA	227	58.88		
2j69A	695	59.51		
2asbA	251	62.09	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
1ypvA	313	63.21		
1zlqA	502	65.13	c.94.1.1	125253
1xv5A	401	66.98		
1dmgA	225	68.68	c.22.1.1	31036
1b5eA	246	69.58	d.117.1.1	41056
2nwhA	317	69.70		
2pezA	179	70.50		
1f5nA	592	70.81	a.114.1.1,c.37.1.8	19077,32152
1u9yA	284	72.94	c.61.1.2,c.61.1.2	119655,119656
2p1zA	180	73.46		
1z7xW	461	78.30	c.10.1.1	124675
1em8A	147	81.10	c.128.1.1	90457
2etjA	250	81.49	c.55.3.1	132360
1h9oA	112	81.59	d.93.1.1	60837
1h5rA	293	84.34	c.68.1.6	65623
1a3c	181	84.52		
2pi6A	361	86.87		
2v40A	459	87.46