# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tp5A	119	1.18e-12	b.36.1.1	119305
2qg1A	92	1.36e-12		
2he2A	102	1.37e-12		
1g9oA	91	1.48e-12	b.36.1.1	60400
2ozfA	92	1.84e-12		
2he4A	90	2.05e-12		
1qauA	112	3.19e-12	b.36.1.1	24779
2awxA	105	4.07e-12		
2opgA	98	4.58e-12		
2v90A	96	4.71e-12		
2i1nA	102	6.90e-12		
1nf3C	128	7.66e-12	b.36.1.1	85596
2jikA	101	7.80e-12		
2iwnA	97	8.12e-12		
2fe5A	94	8.40e-12	b.36.1.1	133323
2fneA	117	9.72e-12	b.36.1.1	133813
2fcfA	103	1.18e-11	b.36.1.1	133267
2qkvA	96	1.18e-11		
2ocsA	88	1.27e-11		
1n7eA	97	1.32e-11	b.36.1.1	91691
2jilA	97	1.51e-11		
2egoA	96	1.66e-11		
1q3oA	109	1.74e-11	b.36.1.1	95700
2iwoA	120	2.30e-11		
2f5yA	91	2.44e-11	b.36.1.1	133015
1kwaA	88	2.66e-11	b.36.1.1	24772
1ihjA	98	2.81e-11	b.36.1.1	62382
2pa1A	87	3.01e-11		
2f0aA	98	3.41e-11	b.36.1.1	132661
1x45A	98	3.87e-11	b.36.1.1	121679
1qavA	90	3.89e-11	b.36.1.1	24777
2h2bA	107	5.68e-11		
2reyA	100	5.86e-11		
1r6jA	82	7.50e-11	b.36.1.1	97151
2qt5A	200	7.56e-11		
2pktA	91	8.59e-11		
2q3gA	89	8.92e-11		
1wf7A	103	9.17e-11	b.36.1.1	114577
2uzcA	88	1.08e-10		
2q9vA	90	1.29e-10		
2i04A	85	1.38e-10		
2h3lA	103	1.52e-10	b.36.1.1	136046
2eaqA	90	1.57e-10		
2gzvA	114	1.58e-10		
1fc6A	388	1.74e-10	b.36.1.3,c.14.1.2	64738,64739
2vphA	100	3.01e-10		
2rczA	81	3.21e-10		
3bpuA	88	5.76e-10		
1mfgA	95	7.07e-10	b.36.1.1	79043
2z9iA	324	7.41e-06		
1y8tA	324	8.80e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.52e-05		
1te0A	318	2.01e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	6.93e-05	b.36.1.4,b.47.1.1	73834,73835
1j7xA	302	0.002081	c.14.1.2	66425
1k32A	1045	0.002376	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	1.145		
1f28A	297	10.49	d.117.1.1	59608
2cw5A	255	11.39		
2g8mA	264	12.87		
2g8oA	264	13.45	d.117.1.1	134779
2q6kA	283	14.46		
1bkpA	278	16.77	d.117.1.1	41029
2zbvA	263	19.43		
1ypvA	313	24.34		
1vctA	205	26.07	a.7.12.1,d.286.1.1	119986,119987
1l1qA	186	26.65	c.61.1.1	77653
1qqqA	264	27.31	d.117.1.1	40931
2jbhA	225	30.30		
2adzA	178	30.49	b.55.1.1	126599
1g2qA	187	31.25	c.61.1.1	65117
1u9yA	284	32.72	c.61.1.2,c.61.1.2	119655,119656
1eovA	487	41.73	b.40.4.1,d.104.1.1	25239,40760
1l3kA	196	44.39	d.58.7.1,d.58.7.1	73539,73540
2zmvA	227	45.53		
1a3c	181	46.00		
1y0bA	197	47.27	c.61.1.1	122476
2igbA	179	48.38		
1zn8A	180	48.56	c.61.1.1	125376
1mi8A	158	48.99	b.86.1.2	91279
1cjbA	231	50.08	c.61.1.1	34079
2i62A	265	50.29		
1ev5A	264	50.60	d.117.1.1	40935
2og9A	393	54.49		
2j3tD	219	56.51		
2r2aA	199	56.91		
2p1zA	180	57.76		
2asbA	251	57.83	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
1w30A	201	61.61	c.61.1.1	114118
2aeeA	211	63.23	c.61.1.1	126620
2pi6A	361	63.69		
2f4nA	273	64.38		
1pujA	282	66.66	c.37.1.8	88294
1w8oA	601	69.38	b.1.18.2,b.18.1.1,b.68.1.1	114374,114375,114376
2yzkA	178	69.40		
2z1cA	75	69.71		
1a3cA	181	74.57	c.61.1.1	34095
2guiA	194	75.20	c.55.3.5	135737
1v9sA	208	75.75	c.61.1.1	119894
1fv5A	36	78.04	g.37.1.2	45075
1vdmA	153	79.08	c.61.1.1	119994
2o38A	120	80.36		
2r8rA	228	80.44		
1vchA	175	82.71	c.61.1.1	119980
2j69A	695	83.55		
3c7jA	237	84.48		
1vs0A	310	86.00		
1dmgA	225	86.46	c.22.1.1	31036
1b5eA	246	88.17	d.117.1.1	41056