# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	1.24e-12		
2qg1A	92	1.31e-12		
1tp5A	119	1.46e-12	b.36.1.1	119305
1g9oA	91	1.91e-12	b.36.1.1	60400
2opgA	98	3.27e-12		
2ozfA	92	3.35e-12		
2awxA	105	3.36e-12		
2he4A	90	3.82e-12		
1qauA	112	3.84e-12	b.36.1.1	24779
2fe5A	94	4.49e-12	b.36.1.1	133323
2fneA	117	5.22e-12	b.36.1.1	133813
2i1nA	102	5.40e-12		
1n7eA	97	8.40e-12	b.36.1.1	91691
2qkvA	96	8.48e-12		
2jikA	101	8.63e-12		
1nf3C	128	8.72e-12	b.36.1.1	85596
2iwnA	97	8.99e-12		
2fcfA	103	9.88e-12	b.36.1.1	133267
2jilA	97	1.00e-11		
2ocsA	88	1.12e-11		
1kwaA	88	1.14e-11	b.36.1.1	24772
2v90A	96	1.16e-11		
1qavA	90	1.35e-11	b.36.1.1	24777
1ihjA	98	1.74e-11	b.36.1.1	62382
2iwoA	120	1.86e-11		
2f5yA	91	1.95e-11	b.36.1.1	133015
2pa1A	87	2.18e-11		
2f0aA	98	2.90e-11	b.36.1.1	132661
2reyA	100	3.47e-11		
2qt5A	200	3.51e-11		
1x45A	98	3.65e-11	b.36.1.1	121679
1q3oA	109	4.38e-11	b.36.1.1	95700
2egoA	96	4.95e-11		
2h2bA	107	5.13e-11		
2uzcA	88	5.40e-11		
2pktA	91	5.68e-11		
2q3gA	89	5.73e-11		
2q9vA	90	5.86e-11		
1r6jA	82	6.53e-11	b.36.1.1	97151
2i04A	85	7.52e-11		
1wf7A	103	9.35e-11	b.36.1.1	114577
2gzvA	114	9.52e-11		
1fc6A	388	1.54e-10	b.36.1.3,c.14.1.2	64738,64739
2h3lA	103	1.70e-10	b.36.1.1	136046
2rczA	81	2.35e-10		
2vphA	100	2.40e-10		
2eaqA	90	2.64e-10		
1mfgA	95	4.42e-10	b.36.1.1	79043
3bpuA	88	7.94e-10		
1y8tA	324	5.00e-06	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	1.04e-05		
2z9iA	324	1.07e-05		
1te0A	318	1.97e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	2.89e-05	b.36.1.4,b.47.1.1	73834,73835
1k32A	1045	0.002954	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.005781	c.14.1.2	66425
2i6vA	87	1.008		
1g2qA	187	12.85	c.61.1.1	65117
2q6kA	283	13.61		
2g8oA	264	14.85	d.117.1.1	134779
1vctA	205	14.91	a.7.12.1,d.286.1.1	119986,119987
2zbvA	263	16.91		
1bkpA	278	17.10	d.117.1.1	41029
2g8mA	264	17.16		
1f28A	297	19.62	d.117.1.1	59608
2cw5A	255	21.92		
2jbhA	225	23.69		
2z1cA	75	26.49		
1qqqA	264	26.51	d.117.1.1	40931
2zmvA	227	28.25		
1l1qA	186	31.82	c.61.1.1	77653
2j3tD	219	31.84		
1mi8A	158	32.43	b.86.1.2	91279
1zn8A	180	35.41	c.61.1.1	125376
2igbA	179	36.44		
2adzA	178	37.39	b.55.1.1	126599
1w30A	201	38.02	c.61.1.1	114118
2i62A	265	39.44		
1ev5A	264	41.88	d.117.1.1	40935
1v9sA	208	45.24	c.61.1.1	119894
1ypvA	313	46.78		
1f5nA	592	48.14	a.114.1.1,c.37.1.8	19077,32152
1u9yA	284	48.29	c.61.1.2,c.61.1.2	119655,119656
2jsnA	96	48.54		
1eovA	487	49.68	b.40.4.1,d.104.1.1	25239,40760
2p1zA	180	50.04		
1l3kA	196	54.13	d.58.7.1,d.58.7.1	73539,73540
1h5rA	293	56.00	c.68.1.6	65623
1cjbA	231	57.62	c.61.1.1	34079
1dmgA	225	59.49	c.22.1.1	31036
2og9A	393	62.78		
1iq8A	582	64.93	c.1.20.1,b.122.1.1,d.17.6.1	71270,83074,83075
1a3c	181	65.10		
2r2aA	199	68.46		
3bs5A	106	68.68		
2nwhA	317	68.79		
1fi2A	201	68.95	b.82.1.2	59845
2r8rA	228	69.13		
2o38A	120	73.16		
2v40A	459	74.66		
1z7xW	461	75.65	c.10.1.1	124675
2yzkA	178	76.67		
1wd5A	208	77.83	c.61.1.1	114524
1p2fA	220	79.18	a.4.6.1,c.23.1.1	87720,87721
2asbA	251	82.24	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
2pezA	179	86.20		
2guiA	194	89.25	c.55.3.5	135737