# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.12e-11		
2qg1A	92	8.47e-11		
1g9oA	91	9.76e-11	b.36.1.1	60400
2i1nA	102	1.02e-10		
2opgA	98	1.03e-10		
1tp5A	119	1.07e-10	b.36.1.1	119305
2fe5A	94	1.24e-10	b.36.1.1	133323
2awxA	105	1.38e-10		
2fneA	117	1.62e-10	b.36.1.1	133813
2he4A	90	1.74e-10		
1n7eA	97	1.87e-10	b.36.1.1	91691
2jikA	101	1.93e-10		
2ozfA	92	2.00e-10		
2jilA	97	2.14e-10		
1qavA	90	2.34e-10	b.36.1.1	24777
2fcfA	103	2.79e-10	b.36.1.1	133267
1wf7A	103	2.81e-10	b.36.1.1	114577
2v90A	96	3.09e-10		
2iwnA	97	3.23e-10		
1x45A	98	3.56e-10	b.36.1.1	121679
2pa1A	87	4.87e-10		
2iwoA	120	6.07e-10		
2pktA	91	6.67e-10		
2uzcA	88	6.69e-10		
2ocsA	88	8.04e-10		
1ihjA	98	8.08e-10	b.36.1.1	62382
2q3gA	89	8.28e-10		
1nf3C	128	8.37e-10	b.36.1.1	85596
1kwaA	88	8.40e-10	b.36.1.1	24772
2qkvA	96	1.01e-09		
2f5yA	91	1.04e-09	b.36.1.1	133015
2qt5A	200	1.07e-09		
1qauA	112	1.35e-09	b.36.1.1	24779
2q9vA	90	1.37e-09		
2h2bA	107	1.80e-09		
1q3oA	109	1.95e-09	b.36.1.1	95700
2reyA	100	2.06e-09		
2egoA	96	2.17e-09		
2vphA	100	2.28e-09		
2h3lA	103	2.33e-09	b.36.1.1	136046
2f0aA	98	2.45e-09	b.36.1.1	132661
2gzvA	114	2.68e-09		
2i04A	85	4.16e-09		
1r6jA	82	5.32e-09	b.36.1.1	97151
1mfgA	95	6.22e-09	b.36.1.1	79043
3bpuA	88	2.75e-08		
1fc6A	388	3.12e-08	b.36.1.3,c.14.1.2	64738,64739
2eaqA	90	3.74e-08		
2rczA	81	2.57e-06		
2p3wA	112	0.000204		
1y8tA	324	0.000213	b.36.1.4,b.47.1.1	122763,122764
2z9iA	324	0.000250		
1lcyA	325	0.000418	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000494	b.36.1.4,b.47.1.1	112400,112401
1k32A	1045	0.009464	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.02603	c.14.1.2	66425
2i6vA	87	3.108		
1l3kA	196	12.12	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	18.18	d.58.7.1,d.58.7.1	39183,39184
1jdlA	121	28.02	a.3.1.1	66557
2qsfX	171	32.13		
3c2cA	112	41.49	a.3.1.1	15885
1d0qA	103	59.12	g.41.3.2	45208
1n91A	108	59.14	d.206.1.1	80326
1vs0A	310	61.71		
2zmvA	227	62.25		
2q6kA	283	63.35		
2nlwA	105	63.86		
2zihA	347	67.76		
2guiA	194	76.75	c.55.3.5	135737
2cw5A	255	78.38		
2yyhA	139	79.01		
3by6A	126	82.13		
1wotA	98	82.68	d.218.1.5	109470
2di3A	239	83.58		
2pfuA	99	85.19		
2ek5A	129	86.18		
2j3tD	219	86.86