# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.25e-14		
2qg1A	92	6.57e-14		
1g9oA	91	1.04e-13	b.36.1.1	60400
1qavA	90	1.16e-13	b.36.1.1	24777
1tp5A	119	1.78e-13	b.36.1.1	119305
2ozfA	92	2.04e-13		
2v90A	96	2.30e-13		
2jilA	97	2.36e-13		
2awxA	105	2.51e-13		
2he4A	90	3.02e-13		
2opgA	98	3.13e-13		
2i1nA	102	3.25e-13		
2fneA	117	3.27e-13	b.36.1.1	133813
1n7eA	97	3.58e-13	b.36.1.1	91691
2iwnA	97	4.38e-13		
2jikA	101	4.47e-13		
1nf3C	128	4.79e-13	b.36.1.1	85596
2fe5A	94	6.00e-13	b.36.1.1	133323
1x45A	98	7.62e-13	b.36.1.1	121679
2qt5A	200	7.72e-13		
2fcfA	103	8.99e-13	b.36.1.1	133267
2qkvA	96	9.44e-13		
1qauA	112	9.81e-13	b.36.1.1	24779
2iwoA	120	1.17e-12		
1ihjA	98	1.32e-12	b.36.1.1	62382
2pa1A	87	1.39e-12		
1kwaA	88	1.67e-12	b.36.1.1	24772
2q9vA	90	1.84e-12		
2reyA	100	1.87e-12		
1wf7A	103	1.93e-12	b.36.1.1	114577
2ocsA	88	2.05e-12		
2uzcA	88	2.24e-12		
2h2bA	107	2.31e-12		
2pktA	91	2.45e-12		
2f0aA	98	2.51e-12	b.36.1.1	132661
2egoA	96	2.65e-12		
2gzvA	114	3.45e-12		
1q3oA	109	3.80e-12	b.36.1.1	95700
2f5yA	91	4.37e-12	b.36.1.1	133015
2q3gA	89	4.41e-12		
2i04A	85	5.35e-12		
2vphA	100	9.70e-12		
1fc6A	388	2.90e-11	b.36.1.3,c.14.1.2	64738,64739
2h3lA	103	3.13e-11	b.36.1.1	136046
1r6jA	82	6.07e-11	b.36.1.1	97151
1mfgA	95	8.81e-11	b.36.1.1	79043
3bpuA	88	1.37e-10		
2eaqA	90	2.94e-10		
2rczA	81	1.09e-08		
2p3wA	112	1.03e-05		
2z9iA	324	1.89e-05		
1y8tA	324	1.93e-05	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	2.50e-05	b.36.1.4,b.47.1.1	112400,112401
1lcyA	325	5.03e-05	b.36.1.4,b.47.1.1	73834,73835
1k32A	1045	0.005407	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.01199	c.14.1.2	66425
2i6vA	87	0.4568		
1w30A	201	5.422	c.61.1.1	114118
2g8mA	264	11.16		
1bkpA	278	11.36	d.117.1.1	41029
2jsnA	96	12.07		
2g8oA	264	13.38	d.117.1.1	134779
2igbA	179	14.34		
1qqqA	264	14.59	d.117.1.1	40931
1f28A	297	16.80	d.117.1.1	59608
3bpkA	206	22.70		
1xv5A	401	25.10		
1f5nA	592	25.20	a.114.1.1,c.37.1.8	19077,32152
1z7xW	461	26.78	c.10.1.1	124675
1dmgA	225	27.75	c.22.1.1	31036
1ev5A	264	27.75	d.117.1.1	40935
1ypvA	313	27.85		
1xm7A	195	32.77	d.159.1.8	115473
1g2qA	187	34.24	c.61.1.1	65117
2zbvA	263	35.01		
2q4gW	461	41.04	c.10.1.1	139849
2o07A	304	41.83	c.66.1.17	138862
2cw5A	255	47.20		
1oroA	213	48.96	c.61.1.1	34093
1l3kA	196	50.21	d.58.7.1,d.58.7.1	73539,73540
1pujA	282	53.67	c.37.1.8	88294
1tzfA	259	54.21	c.68.1.13	107476
2f69A	261	55.19	b.76.2.1,b.85.7.1	133035,133036
2q6kA	283	55.26		
1u14A	172	55.59	c.51.4.3	107579
2acfA	182	55.78	c.50.1.2	126547
1rqpA	299	55.94	b.141.1.1,c.132.1.1	97754,97755
2zihA	347	55.97		
1ua4A	455	56.96	c.72.1.3	99128
3bs5A	106	67.79		
1a3c	181	68.24		
1up7A	417	70.88	c.2.1.5,d.162.1.2	113374,113375
1k2xB	143	72.06		
1ws8A	109	72.40	b.6.1.1	114843
2bazA	142	73.78		
1vchA	175	74.26	c.61.1.1	119980
2pezA	179	78.31		
2yweA	600	79.98		
1kgsA	225	80.40	a.4.6.1,c.23.1.1	68596,68597
2p1zA	180	85.87