# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qg1A 92 3.71e-15 1g9oA 91 7.76e-15 b.36.1.1 60400 2opgA 98 2.72e-14 2ozfA 92 3.41e-14 1qavA 90 5.29e-14 b.36.1.1 24777 1ihjA 98 7.91e-14 b.36.1.1 62382 2he2A 102 8.76e-14 2jikA 101 9.90e-14 2gzvA 114 1.19e-13 2fe5A 94 1.21e-13 b.36.1.1 133323 2uzcA 88 1.24e-13 2f5yA 91 1.64e-13 b.36.1.1 133015 2jilA 97 1.67e-13 1tp5A 119 1.85e-13 b.36.1.1 119305 2v90A 96 1.89e-13 2egoA 96 2.09e-13 2h2bA 107 2.18e-13 2fneA 117 2.53e-13 b.36.1.1 133813 2i1nA 102 2.83e-13 2ocsA 88 3.34e-13 2fcfA 103 3.41e-13 b.36.1.1 133267 1kwaA 88 3.85e-13 b.36.1.1 24772 1qauA 112 4.58e-13 b.36.1.1 24779 2awxA 105 6.49e-13 2qkvA 96 6.76e-13 2q3gA 89 6.87e-13 2he4A 90 7.01e-13 1n7eA 97 7.74e-13 b.36.1.1 91691 2pktA 91 9.03e-13 2iwnA 97 1.23e-12 2pa1A 87 1.55e-12 2q9vA 90 1.60e-12 1x45A 98 1.82e-12 b.36.1.1 121679 1r6jA 82 1.82e-12 b.36.1.1 97151 2iwoA 120 2.13e-12 2reyA 100 3.22e-12 2vphA 100 3.43e-12 2h3lA 103 3.97e-12 b.36.1.1 136046 1q3oA 109 4.61e-12 b.36.1.1 95700 1mfgA 95 5.68e-12 b.36.1.1 79043 2qt5A 200 5.93e-12 2i04A 85 7.91e-12 3bpuA 88 9.06e-12 1nf3C 128 1.25e-11 b.36.1.1 85596 1wf7A 103 1.56e-11 b.36.1.1 114577 2f0aA 98 3.43e-11 b.36.1.1 132661 2eaqA 90 2.92e-10 1fc6A 388 5.54e-09 b.36.1.3,c.14.1.2 64738,64739 2rczA 81 4.58e-08 1y8tA 324 8.39e-06 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 3.90e-05 2z9iA 324 4.77e-05 1lcyA 325 9.83e-05 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 0.000657 1te0A 318 0.000931 b.36.1.4,b.47.1.1 112400,112401 1k32A 1045 0.04746 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3bdiA 207 3.895 1l3kA 196 3.960 d.58.7.1,d.58.7.1 73539,73540 2yysA 286 4.357 2dstA 131 4.703 1y37A 304 5.619 1i4uA 181 5.886 b.60.1.1 61732 2bz1A 196 6.802 c.144.1.1 129532 1mtzA 293 9.298 c.69.1.7 79467 2qdfA 335 9.334 1y9kA 157 10.30 d.108.1.1 122779 1j1iA 296 11.45 c.69.1.10 83977 2o38A 120 12.10 1ygsA 234 12.64 b.26.1.1 23907 2jsnA 96 13.57 2h7aA 110 13.69 2bm0A 691 13.77 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1fxlA 167 16.71 d.58.7.1,d.58.7.1 39183,39184 1xqwA 293 16.84 1a62A 130 18.49 a.140.3.1,b.40.4.5 64708,64709 1um0A 365 18.76 d.258.1.1 107942 2ffqA 171 19.12 1vj0A 380 19.59 b.35.1.2,c.2.1.1 100786,100787 2bw3A 534 19.79 a.270.1.1,c.55.3.12 129317,129318 2e3jA 356 19.89 1bn7A 294 20.34 c.69.1.8 34677 1a62 130 20.44 2vmhA 151 20.48 2cdqA 510 21.92 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 1ji0A 240 22.09 c.37.1.12 71665 1vc3B 97 24.32 2gs8A 317 26.10 2a7lA 136 27.15 d.20.1.1 126350 1vkcA 158 29.28 d.108.1.1 113663 3bwxA 285 30.50 2a14A 263 33.92 c.66.1.15 125972 1m5q1 130 34.81 1q0rA 298 36.63 c.69.1.28 95508 1ek0A 170 36.97 c.37.1.8 32076 1brwA 433 37.37 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2f9lA 199 37.70 c.37.1.8 133166 2j3tD 219 37.72 1ckmA 330 38.37 b.40.4.6,d.142.2.3 25358,41585 2r11A 306 40.07 3c5vA 316 40.25 1u2cA 246 42.68 b.1.6.2,d.272.1.1 107610,107611 1luzA 88 43.21 b.40.4.5 74271 2ew1A 201 45.68 c.37.1.8 132446 1ryp1 222 45.93 2i3dA 249 49.00 4ubpB 126 49.36 b.85.3.1 28345 1s3zA 165 49.50 d.108.1.1 105250 1lngA 87 51.03 d.201.1.1 74045 1ygyA 529 51.15 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1cq3A 233 51.53 b.27.1.1 23923 1azwA 313 53.67 c.69.1.7 34658 2i62A 265 54.74 2g72A 289 58.16 c.66.1.15 134724 1zd3A 555 59.14 c.108.1.2,c.69.1.11 124930,124931 1dmgA 225 61.54 c.22.1.1 31036 1pne 140 61.69 2fukA 220 63.93 1phpA 394 66.66 c.86.1.1 35452 1x3sA 195 66.72 c.37.1.8 121670 1mucA 373 66.84 c.1.11.2,d.54.1.1 29236,38880 2gf9A 189 68.84 2o2gA 223 69.09 1yzqA 170 70.13 c.37.1.8 124286 2oe3A 114 71.40 1r2qA 170 71.55 c.37.1.8 96874 2d2eA 250 72.66 1cjwA 166 73.92 d.108.1.1 40818 2qklA 127 75.48 2j5zA 221 76.01 1uheA 97 77.75 2ocgA 254 77.92 1f8fA 371 78.62 b.35.1.2,c.2.1.1 83246,83247 2gt1A 326 82.26 1lfpA 249 83.41 e.39.1.1 73885 2hxsA 178 83.78 1u9yA 284 83.79 c.61.1.2,c.61.1.2 119655,119656 2zmvA 227 84.94 1wv8A 73 86.09 d.304.1.1 121326 1rhs 296 88.37 2v8fA 140 88.98 1vs0A 310 89.07 1acf 125 89.90