Best Alignments for TR488

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1tp5A	2.5824e-13	1tp5A/TR488-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1g9oA	2.9935e-13	1g9oA/TR488-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1be9A	4.2630e-13	1be9A/TR488-1be9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2qt5A	4.7815e-13	2qt5A/TR488-2qt5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2he2A	5.3227e-13	2he2A/TR488-2he2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ozfA	5.9260e-13	2ozfA/TR488-2ozfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h2bA	1.0407e-12	2h2bA/TR488-2h2bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bpuA	1.3075e-12	3bpuA/TR488-3bpuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2he4A	1.8046e-12	2he4A/TR488-2he4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n7eA	1.9879e-12	1n7eA/TR488-1n7eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2v90A	2.4361e-12	2v90A/TR488-2v90A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i1nA	2.5237e-12	2i1nA/TR488-2i1nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fcfA	2.6698e-12	2fcfA/TR488-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1qavA	2.6872e-12	1qavA/TR488-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2qg1A	2.7127e-12	2qg1A/TR488-2qg1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ihjA	2.7393e-12	1ihjA/TR488-1ihjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2h3lA	2.9969e-12	2h3lA/TR488-2h3lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1kwaA	3.5521e-12	1kwaA/TR488-1kwaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2fe5A	3.9019e-12	2fe5A/TR488-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1qauA	4.2162e-12	1qauA/TR488-1qauA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001