# List of top-scoring protein chains for TR488.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 3.43e-08 1um7A 113 5.40e-08 b.36.1.1 99579 1rgrA 99 6.82e-08 b.36.1.1 104931 1kefA 93 9.21e-08 b.36.1.1 72369 1tp5A 119 1.02e-07 b.36.1.1 119305 1be9A 119 1.14e-07 b.36.1.1 24774 1iu0A 91 1.23e-07 b.36.1.1 83707 1zokA 93 1.34e-07 b.36.1.1 125451 2dkrA 93 1.42e-07 2dm8A 116 1.54e-07 1pdrA 99 1.54e-07 b.36.1.1 24771 2enoA 120 1.65e-07 2jikA 101 1.95e-07 2i1nA 102 2.09e-07 2jinA 102 2.16e-07 2bygA 117 2.75e-07 b.36.1.1 129480 2i0iA 85 3.90e-07 b.36.1.1 136953 2opgA 98 3.96e-07 2fneA 117 4.53e-07 b.36.1.1 133813 1d5gA 96 4.60e-07 b.36.1.1 70080 2awxA 105 4.62e-07 2g2lA 105 5.76e-07 2fe5A 94 5.79e-07 b.36.1.1 133323 2awwA 105 6.59e-07 2awuA 105 6.61e-07 2r4hA 112 6.67e-07 1wf8A 107 6.69e-07 b.36.1.1 120967 2fcfA 103 6.89e-07 b.36.1.1 133267 2iwqA 123 6.97e-07 2qg1A 92 6.99e-07 1vj6A 102 7.34e-07 b.36.1.1 120064 1gm1A 94 7.47e-07 b.36.1.1 70271 2jreA 108 8.05e-07 2dazA 124 9.02e-07 1whaA 105 9.54e-07 b.36.1.1 114638 2oqsA 97 9.60e-07 2jilA 97 1.04e-06 2qt5A 200 1.09e-06 2dc2A 103 1.10e-06 2fn5A 94 1.15e-06 1gq5A 91 1.17e-06 b.36.1.1 76274 1gq4A 90 1.25e-06 b.36.1.1 70340 1i92A 91 1.27e-06 b.36.1.1 61990 1uhpA 107 1.29e-06 b.36.1.1 99400 1g9oA 91 1.33e-06 b.36.1.1 60400 2he4A 90 1.46e-06 2iwoA 120 1.48e-06 2ocsA 88 1.48e-06 2g5mB 113 1.49e-06 2ogpA 97 1.54e-06 1qlcA 95 1.55e-06 b.36.1.1 24776 1wfvA 103 1.83e-06 b.36.1.1 114594 1uezA 101 1.92e-06 b.36.1.1 99286 2djtA 104 1.96e-06 1z87A 263 1.99e-06 1x5qA 110 2.19e-06 b.36.1.1 121717 2o2tA 117 2.38e-06 1q7xA 108 2.67e-06 b.36.1.1 96059 1qavA 90 2.93e-06 b.36.1.1 24777 2dluA 111 2.93e-06 2dmzA 129 3.01e-06 1ueqA 123 3.61e-06 b.36.1.1 99271 1z86A 87 3.67e-06 b.36.1.1 124690 1t2mA 101 3.69e-06 b.36.1.1 119133 1uewA 114 3.72e-06 b.36.1.1 99281 2ozfA 92 3.87e-06 2pdzA 86 3.88e-06 b.36.1.1 24778 2ehrA 117 4.01e-06 1xz9A 101 4.02e-06 b.36.1.1 122471 1ihjA 98 4.47e-06 b.36.1.1 62382 2ainA 93 4.50e-06 2reyA 100 4.59e-06 2vrfA 95 4.64e-06 1um1A 110 4.83e-06 b.36.1.1 99578 2csjA 117 4.96e-06 b.36.1.1 130771 2iwnA 97 5.02e-06 2i0lA 84 5.12e-06 1oziA 99 5.26e-06 b.36.1.1 93845 2d90A 102 5.52e-06 1ujuA 111 6.27e-06 b.36.1.1 99469 2q9vA 90 6.34e-06 1qavB 115 6.45e-06 b.36.1.1 24780 1b8qA 127 6.59e-06 b.36.1.1 24781 2f0aA 98 7.47e-06 b.36.1.1 132661 1l6oA 95 8.08e-06 b.36.1.1 84534 1mc7A 95 8.20e-06 b.36.1.1 91241 1qauA 112 8.35e-06 b.36.1.1 24779 1uf1A 128 9.98e-06 b.36.1.1 99288 2db5A 128 1.05e-05 2h3lA 103 1.16e-05 b.36.1.1 136046 2d92A 108 1.19e-05 1mfgA 95 1.20e-05 b.36.1.1 79043 1uepA 103 1.38e-05 b.36.1.1 99270 1n7eA 97 1.46e-05 b.36.1.1 91691 1x6dA 119 1.65e-05 b.36.1.2 121739 1wg6A 127 1.66e-05 b.36.1.1 114603 1x8sA 102 1.75e-05 b.36.1.1 114967 1wi2A 104 1.85e-05 b.36.1.1 114659 2k1zA 104 1.87e-05 2h2cA 107 1.91e-05 2h2bA 107 1.91e-05 1m5zA 91 1.92e-05 b.36.1.1 78676 1rzxA 98 1.98e-05 b.36.1.1 98236 1wh1A 124 2.06e-05 b.36.1.1 114629 2jweA 88 2.15e-05 3b76A 118 2.15e-05 1ry4A 128 2.25e-05 b.36.1.1 98085 2qbwA 195 2.34e-05 2eeiA 106 2.36e-05 2rczA 81 2.37e-05 2eejA 96 2.48e-05 2h3mA 97 2.68e-05 1v62A 117 3.07e-05 b.36.1.1 108390 2pktA 91 3.20e-05 1i16A 130 3.30e-05 b.36.1.2 24787 1x5rA 112 3.91e-05 b.36.1.1 121718 2osgA 83 4.09e-05 1wi4A 109 4.62e-05 b.36.1.1 120973 2edzA 114 4.84e-05 2eehA 100 5.59e-05 1x5nA 114 5.67e-05 b.36.1.1 121714 1nf3C 128 5.71e-05 b.36.1.1 85596 1uitA 117 5.71e-05 b.36.1.1 99433 3bpuA 88 5.73e-05 2i04A 85 5.99e-05 2v90A 96 6.36e-05 1p1dA 196 6.37e-05 b.36.1.1,b.36.1.1 93896,93897 2v1wA 90 6.44e-05 2omjA 89 7.29e-05 2yuyA 126 7.64e-05 1vb7A 94 8.08e-05 b.36.1.1 108474 1q3oA 109 8.16e-05 b.36.1.1 95700 1v5lA 103 9.69e-05 b.36.1.1 108378 1ujdA 117 9.99e-05 b.36.1.1 99454 2eegA 94 0.000103 2uzcA 88 0.000144 2z17A 104 0.000148 2dlsA 93 0.000159 2pa1A 87 0.000164 1v5qA 122 0.000168 b.36.1.1 108383 1p1eA 101 0.000196 b.36.1.1 93898 2vphA 100 0.000197 2cs5A 119 0.000203 b.36.1.1 130747 2cssA 121 0.000210 b.36.1.1 130780 2edvA 96 0.000221 1kwaA 88 0.000240 b.36.1.1 24772 2f5yA 91 0.000248 b.36.1.1 133015 1wf7A 103 0.000251 b.36.1.1 114577 1va8A 113 0.000284 b.36.1.1 119903 2egkA 101 0.000285 2q3gA 89 0.000290 1rgwA 85 0.000296 b.36.1.1 97455 2ev8A 97 0.000299 2qktA 90 0.000304 2edpA 100 0.000314 1wfgA 131 0.000340 b.36.1.1 114581 2ejyA 97 0.000345 2pkuA 87 0.000346 1wjlA 90 0.000347 b.36.1.1 114701 1w9eA 166 0.000355 b.36.1.1,b.36.1.1 120779,120780 1ujvA 96 0.000362 b.36.1.1 99470 2egoA 96 0.000368 2gzvA 114 0.000383 1zubA 114 0.000405 b.36.1.1 125665 2pntA 98 0.000422 1u3bA 185 0.000441 b.36.1.1,b.36.1.1 119508,119509 2qkvA 96 0.000442 1v6bA 118 0.000512 b.36.1.1 108394 1whdA 100 0.000523 b.36.1.1 114641 1x45A 98 0.000744 b.36.1.1 121679 1u37A 89 0.000829 b.36.1.1 119501 1y7nA 90 0.000995 b.36.1.1 122700 1u39A 80 0.001136 b.36.1.1 119503 2yt7A 101 0.001506 2yt8A 94 0.001992 1wifA 126 0.002016 b.36.1.1 114669 2e7kA 91 0.004869 1r6jA 82 0.006610 b.36.1.1 97151 1vaeA 111 0.008688 b.36.1.1 108466 1obxA 79 0.009318 b.36.1.1 86783 1ufxA 103 0.01123 b.36.1.1 99359 2eaqA 90 0.03105 2d8iA 114 0.03164 2yubA 118 0.03647 2vsvA 109 0.07650 2p3wA 112 0.08432 2ytwA 118 0.1013 2joaA 105 0.1058 2pzdA 113 0.2008 1lcyA 325 0.8938 b.36.1.4,b.47.1.1 73834,73835 1fc6A 388 0.9762 b.36.1.3,c.14.1.2 64738,64739 3cs0A 448 1.027 1ky9A 448 1.071 b.36.1.4,b.47.1.1 73198,73199 1fc9A 388 1.259 b.36.1.3,c.14.1.2 64742,64743 2hgaA 125 2.430 1sotA 320 3.233 b.36.1.4,b.47.1.1 105852,105853 1te0A 318 3.234 b.36.1.4,b.47.1.1 112400,112401 1sozA 314 3.256 b.36.1.4,b.47.1.1 105859,105860 2z9iA 324 33.48 2dy0A 190 36.14 1x6vA 630 38.80 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2plnA 137 52.89 2p0lA 288 58.39 2hqoA 123 59.20 2bh4X 134 66.40 2bgvX 134 67.46 1zn8A 180 71.93 c.61.1.1 125376 2i6vA 87 79.88