# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	4.43e-13		
1tp5A	119	4.71e-13	b.36.1.1	119305
1be9A	119	8.81e-13	b.36.1.1	24774
2qg1A	92	8.84e-13		
2i1nA	102	1.19e-12		
2ozfA	92	1.21e-12		
2iwnA	97	1.60e-12		
1g9oA	91	1.72e-12	b.36.1.1	60400
2jilA	97	1.85e-12		
2opgA	98	2.04e-12		
2he4A	90	2.38e-12		
2qt5A	200	2.60e-12		
1n7eA	97	2.94e-12	b.36.1.1	91691
2fneA	117	3.00e-12	b.36.1.1	133813
2v90A	96	3.45e-12		
1qauA	112	3.49e-12	b.36.1.1	24779
2awxA	105	3.65e-12		
2jikA	101	3.76e-12		
1qavA	90	4.49e-12	b.36.1.1	24777
2qkvA	96	4.58e-12		
2fe5A	94	4.90e-12	b.36.1.1	133323
1kwaA	88	4.96e-12	b.36.1.1	24772
1ihjA	98	5.86e-12	b.36.1.1	62382
2fcfA	103	7.19e-12	b.36.1.1	133267
2ocsA	88	9.11e-12		
2iwoA	120	9.44e-12		
2gzvA	114	1.19e-11		
1l6oA	95	1.89e-11	b.36.1.1	84534
2q3gA	89	2.07e-11		
2f0aA	98	2.13e-11	b.36.1.1	132661
2pktA	91	2.74e-11		
2f5yA	91	3.00e-11	b.36.1.1	133015
1q3oA	109	3.22e-11	b.36.1.1	95700
1x45A	98	3.23e-11	b.36.1.1	121679
2reyA	100	3.43e-11		
2h2bA	107	4.72e-11		
2i04A	85	5.46e-11		
2uzcA	88	5.83e-11		
1wf7A	103	6.28e-11	b.36.1.1	114577
2egoA	96	7.63e-11		
2q9vA	90	7.73e-11		
2h3lA	103	7.79e-11	b.36.1.1	136046
2vphA	100	1.05e-10		
2pa1A	87	1.29e-10		
2rczA	81	1.37e-10		
1r6jA	82	1.43e-10	b.36.1.1	97151
3bpuA	88	1.45e-10		
1v5lA	103	1.85e-10	b.36.1.1	108378
1nf3C	128	1.96e-10	b.36.1.1	85596
1fc6A	388	2.62e-10	b.36.1.3,c.14.1.2	64738,64739
1mfgA	95	2.84e-10	b.36.1.1	79043
2eaqA	90	3.52e-09		
2z9iA	324	9.59e-06		
2p3wA	112	4.54e-05		
1y8tA	324	6.55e-05	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.000436	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.000593	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.003566	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.008092	b.55.1.1	126599
1k32A	1045	0.06142	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	0.2239		
1j7xA	302	1.159	c.14.1.2	66425
2p1zA	180	1.349		
1ha1	184	3.094		
2ps1A	226	4.316		
1g2qA	187	6.668	c.61.1.1	65117
1l3kA	196	7.159	d.58.7.1,d.58.7.1	73539,73540
2g8mA	264	7.627		
1evfA	264	7.636	d.117.1.1	40932
2rgqA	144	7.755		
1hvyA	288	7.889	d.117.1.1	41049
2adcA	229	8.087	d.58.7.1,d.58.7.1	126582,126583
1qqqA	264	8.480	d.117.1.1	40931
2g8oA	264	9.239	d.117.1.1	134779
2dkaA	544	9.611		
1bkpA	278	10.40	d.117.1.1	41029
1l1qA	186	11.68	c.61.1.1	77653
1vchA	175	12.72	c.61.1.1	119980
1c9oA	66	14.93	b.40.4.5	25325
1ypvA	313	15.03		
2yzkA	178	16.81		
2aeeA	211	19.02	c.61.1.1	126620
1l5jA	865	19.08	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1qm9A	198	27.03	d.58.7.1,d.58.7.1	39207,39208
2e3dA	302	30.12		
2dy0A	190	31.35		
2d5wA	603	33.70		
3dahA	319	36.05		
1krhA	338	39.63	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1ev5A	264	41.24	d.117.1.1	40935
3bs5A	106	41.53		
1dkuA	317	42.58	c.61.1.2,c.61.1.2	34118,34119
1mjc	69	42.73		
1b5eA	246	43.59	d.117.1.1	41056
1dmgA	225	46.68	c.22.1.1	31036
1th7A	81	47.63	b.38.1.1	119264
2q6kA	283	48.57		
2vliA	183	53.73		
1fxlA	167	55.34	d.58.7.1,d.58.7.1	39183,39184
2go9A	161	57.68		
2hcrA	326	57.93		
1mw9X	592	59.73	e.10.1.1	91480
1f28A	297	61.57	d.117.1.1	59608
2gebA	185	62.80		
1w30A	201	63.98	c.61.1.1	114118
2jfrA	234	64.63		
2yyhA	139	65.78		
2ywkA	95	67.95		
1vjnA	220	68.68	d.157.1.4	100825
1zn8A	180	69.72	c.61.1.1	125376
2hs5A	239	77.22		
1s8nA	205	77.79	c.23.1.1	105374
2btuA	346	77.92		
2jbhA	225	78.13		
3cpkA	150	80.74		
1qksA	567	81.91	a.3.1.2,b.70.2.1	15951,27710
1cjbA	231	83.28	c.61.1.1	34079
2akaB	299	84.74	c.37.1.8	126914
1tuoA	464	87.84