# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 2.98e-13 1tp5A 119 3.40e-13 b.36.1.1 119305 2i1nA 102 5.67e-13 2qg1A 92 5.88e-13 1be9A 119 6.41e-13 b.36.1.1 24774 2ozfA 92 1.12e-12 2jilA 97 1.18e-12 2qt5A 200 1.23e-12 2iwnA 97 1.32e-12 1qauA 112 1.44e-12 b.36.1.1 24779 1n7eA 97 1.47e-12 b.36.1.1 91691 2opgA 98 1.53e-12 2jikA 101 1.68e-12 1g9oA 91 1.83e-12 b.36.1.1 60400 1qavA 90 1.86e-12 b.36.1.1 24777 2qkvA 96 2.04e-12 2he4A 90 2.21e-12 2fe5A 94 2.52e-12 b.36.1.1 133323 2fneA 117 2.53e-12 b.36.1.1 133813 2awxA 105 2.60e-12 1kwaA 88 2.79e-12 b.36.1.1 24772 2gzvA 114 3.26e-12 1ihjA 98 3.43e-12 b.36.1.1 62382 2v90A 96 3.71e-12 2fcfA 103 5.97e-12 b.36.1.1 133267 2ocsA 88 8.02e-12 2iwoA 120 1.07e-11 2rczA 81 1.15e-11 2q3gA 89 1.16e-11 1l6oA 95 1.18e-11 b.36.1.1 84534 2f0aA 98 1.72e-11 b.36.1.1 132661 1x45A 98 1.74e-11 b.36.1.1 121679 2q9vA 90 1.89e-11 2reyA 100 2.30e-11 2pktA 91 2.36e-11 2f5yA 91 2.45e-11 b.36.1.1 133015 2i04A 85 2.47e-11 1wf7A 103 2.79e-11 b.36.1.1 114577 2h2bA 107 3.05e-11 1q3oA 109 3.15e-11 b.36.1.1 95700 2uzcA 88 4.89e-11 2vphA 100 5.06e-11 2h3lA 103 5.25e-11 b.36.1.1 136046 2egoA 96 5.98e-11 3bpuA 88 1.05e-10 1nf3C 128 1.17e-10 b.36.1.1 85596 1mfgA 95 1.24e-10 b.36.1.1 79043 2pa1A 87 1.24e-10 1r6jA 82 1.42e-10 b.36.1.1 97151 1fc6A 388 1.63e-10 b.36.1.3,c.14.1.2 64738,64739 1v5lA 103 2.25e-10 b.36.1.1 108378 2eaqA 90 2.08e-09 2z9iA 324 1.72e-05 1y8tA 324 5.23e-05 b.36.1.4,b.47.1.1 122763,122764 2p3wA 112 7.15e-05 1lcyA 325 0.000517 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000518 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.006009 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.006200 b.55.1.1 126599 1k32A 1045 0.08361 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2i6vA 87 0.3588 1j7xA 302 0.8358 c.14.1.2 66425 1ha1 184 1.510 2p1zA 180 1.583 2rgqA 144 5.049 2ps1A 226 6.647 1g2qA 187 6.973 c.61.1.1 65117 1l3kA 196 7.405 d.58.7.1,d.58.7.1 73539,73540 2adcA 229 10.22 d.58.7.1,d.58.7.1 126582,126583 1evfA 264 10.39 d.117.1.1 40932 1qqqA 264 10.97 d.117.1.1 40931 1hvyA 288 13.72 d.117.1.1 41049 2g8mA 264 14.35 1vchA 175 15.18 c.61.1.1 119980 1bkpA 278 15.47 d.117.1.1 41029 2dkaA 544 16.25 2g8oA 264 17.24 d.117.1.1 134779 1l1qA 186 17.91 c.61.1.1 77653 1c9oA 66 18.28 b.40.4.5 25325 1qm9A 198 22.17 d.58.7.1,d.58.7.1 39207,39208 2e3dA 302 22.65 2yzkA 178 24.48 2aeeA 211 26.72 c.61.1.1 126620 1ypvA 313 27.21 2d5wA 603 30.02 2jbhA 225 30.18 1fxlA 167 33.17 d.58.7.1,d.58.7.1 39183,39184 1uldA 150 35.84 b.29.1.3 99545 2gebA 185 39.53 1mjc 69 39.61 1krhA 338 44.42 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2dy0A 190 49.40 1mw9X 592 51.58 e.10.1.1 91480 2yyhA 139 52.01 2ywkA 95 52.26 1b5eA 246 52.72 d.117.1.1 41056 1ev5A 264 53.27 d.117.1.1 40935 1f28A 297 54.04 d.117.1.1 59608 3cfuA 159 55.64 2cq2A 114 57.59 d.58.7.1 130713 1cjbA 231 57.63 c.61.1.1 34079 2blnA 305 60.59 b.46.1.1,c.65.1.1 128734,128735 2btuA 346 62.19 3bs5A 106 62.44 1zn8A 180 64.22 c.61.1.1 125376 1zh5A 195 67.59 a.4.5.46,d.58.7.1 125073,125074 1j54A 186 70.50 c.55.3.5 77077 1l5jA 865 72.89 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1w30A 201 73.12 c.61.1.1 114118 2d9iA 96 74.26 2joyA 96 74.34 1xk5A 204 74.58 2akaB 299 75.35 c.37.1.8 126914 2hs5A 239 77.04 3dahA 319 78.04 2zmvA 227 78.58 2go9A 161 78.85 1gvhA 396 83.01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1qksA 567 83.51 a.3.1.2,b.70.2.1 15951,27710 2hcrA 326 85.58 1vjnA 220 86.44 d.157.1.4 100825 1sjqA 105 87.35 d.58.7.1 105660 2z1cA 75 89.26