# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 1.39e-15 b.36.1.1 119305 2he2A 102 1.83e-15 1be9A 119 2.76e-15 b.36.1.1 24774 2i1nA 102 6.61e-15 2qg1A 92 8.60e-15 1n7eA 97 9.53e-15 b.36.1.1 91691 2ozfA 92 9.55e-15 2qt5A 200 1.22e-14 2iwnA 97 1.24e-14 1qavA 90 1.36e-14 b.36.1.1 24777 2jikA 101 1.62e-14 2he4A 90 1.73e-14 2opgA 98 1.86e-14 1g9oA 91 1.93e-14 b.36.1.1 60400 2fneA 117 2.16e-14 b.36.1.1 133813 2jilA 97 2.21e-14 1qauA 112 2.29e-14 b.36.1.1 24779 2gzvA 114 2.61e-14 2v90A 96 3.36e-14 1kwaA 88 4.45e-14 b.36.1.1 24772 2fe5A 94 4.49e-14 b.36.1.1 133323 2qkvA 96 4.52e-14 2awxA 105 4.91e-14 1ihjA 98 6.01e-14 b.36.1.1 62382 2q3gA 89 7.94e-14 2iwoA 120 8.19e-14 2fcfA 103 8.31e-14 b.36.1.1 133267 1wf7A 103 1.16e-13 b.36.1.1 114577 2ocsA 88 1.33e-13 2rczA 81 1.64e-13 1l6oA 95 2.43e-13 b.36.1.1 84534 2f0aA 98 2.84e-13 b.36.1.1 132661 1x45A 98 3.39e-13 b.36.1.1 121679 2pktA 91 3.55e-13 2h2bA 107 4.16e-13 1q3oA 109 4.56e-13 b.36.1.1 95700 2q9vA 90 4.61e-13 2f5yA 91 5.18e-13 b.36.1.1 133015 2i04A 85 5.26e-13 2h3lA 103 6.64e-13 b.36.1.1 136046 2uzcA 88 7.61e-13 1v5lA 103 8.83e-13 b.36.1.1 108378 2reyA 100 1.15e-12 2vphA 100 1.23e-12 2egoA 96 1.27e-12 1r6jA 82 1.49e-12 b.36.1.1 97151 2pa1A 87 1.70e-12 1fc6A 388 2.15e-12 b.36.1.3,c.14.1.2 64738,64739 1mfgA 95 2.55e-12 b.36.1.1 79043 3bpuA 88 3.14e-12 1nf3C 128 3.19e-12 b.36.1.1 85596 2eaqA 90 1.81e-10 2z9iA 324 6.18e-07 2p3wA 112 8.01e-06 1y8tA 324 9.28e-06 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 0.000167 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.000213 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.000856 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.001287 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2adzA 178 0.01129 b.55.1.1 126599 2i6vA 87 0.03884 2p1zA 180 0.2668 2ps1A 226 0.4147 1j7xA 302 1.019 c.14.1.2 66425 1zn8A 180 1.763 c.61.1.1 125376 1g2qA 187 1.778 c.61.1.1 65117 2aeeA 211 1.857 c.61.1.1 126620 1vchA 175 1.863 c.61.1.1 119980 1krhA 338 2.428 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2rgqA 144 2.487 1ha1 184 2.854 1qb7A 236 4.231 c.61.1.1 34087 1dkuA 317 4.328 c.61.1.2,c.61.1.2 34118,34119 1l3kA 196 4.338 d.58.7.1,d.58.7.1 73539,73540 1cjbA 231 4.549 c.61.1.1 34079 2z1cA 75 5.022 1l1qA 186 5.298 c.61.1.1 77653 2gebA 185 5.633 2jbhA 225 6.422 1s98A 107 6.768 b.124.1.1 105377 2yzkA 178 6.850 2dy0A 190 7.588 1vraB 215 8.276 1r94A 118 8.994 b.124.1.1 97251 3dahA 319 11.25 2jsnA 96 11.44 2hcrA 326 11.47 1c9oA 66 11.83 b.40.4.5 25325 1vdmA 153 11.94 c.61.1.1 119994 2e3dA 302 12.08 1u9yA 284 13.25 c.61.1.2,c.61.1.2 119655,119656 2d5wA 603 13.59 2adcA 229 14.29 d.58.7.1,d.58.7.1 126582,126583 1fsgA 233 16.74 c.61.1.1 34029 1j7jA 178 17.19 c.61.1.1 84131 1z7gA 217 19.57 c.61.1.1 124624 1fxlA 167 19.87 d.58.7.1,d.58.7.1 39183,39184 1wd5A 208 19.98 c.61.1.1 114524 2e55A 208 20.40 1o4uA 285 21.65 c.1.17.1,d.41.2.1 86624,86625 1hgxA 183 21.87 c.61.1.1 34027 2vliA 183 22.48 1bd3A 243 23.22 c.61.1.1 34098 3cpkA 150 23.59 1o5oA 221 23.60 c.61.1.1 92509 1l5jA 865 24.92 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2yyhA 139 25.22 2q6kA 283 25.49 1vctA 205 25.72 a.7.12.1,d.286.1.1 119986,119987 1ir6A 424 25.75 c.107.1.2 71342 1zh5A 195 26.47 a.4.5.46,d.58.7.1 125073,125074 2zmvA 227 26.57 1tc1A 220 26.91 c.61.1.1 34083 2ywkA 95 27.27 2dkaA 544 29.60 2otmA 154 30.74 1i0lA 221 31.32 c.61.1.1 71096 3cfuA 159 32.02 3by6A 126 34.45 2pi6A 361 34.71 1vjnA 220 35.22 d.157.1.4 100825 1mjc 69 35.78 1gvhA 396 36.17 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1moqA 368 37.67 c.80.1.1 35302 2di3A 239 39.10 2okfA 140 41.46 3b5mA 205 41.51 2jfrA 234 43.78 1y0bA 197 44.26 c.61.1.1 122476 1nwbA 124 45.61 b.124.1.1 86296 1xttA 216 47.57 c.61.1.1 122300 1v9sA 208 47.64 c.61.1.1 119894 1thfD 253 47.80 c.1.2.1 28535 2o38A 120 48.23 1xk5A 204 49.60 2j82A 240 49.90 1l7bA 92 50.74 c.15.1.2 91053 1s8nA 205 51.53 c.23.1.1 105374 1bu6O 501 54.16 c.55.1.4,c.55.1.4 33499,33500 3c7jA 237 55.88 1cqxA 403 56.67 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2aefA 234 56.70 1qm9A 198 57.45 d.58.7.1,d.58.7.1 39207,39208 1hvyA 288 57.60 d.117.1.1 41049 2btuA 346 57.88 1vqoA 240 59.21 b.34.5.3,b.40.4.5 120361,120362 1vs0A 310 59.51 1th7A 81 59.76 b.38.1.1 119264 1xm7A 195 60.51 d.159.1.8 115473 2vgaA 207 60.77 1at0 145 62.30 2dx0A 138 64.08 1f28A 297 64.17 d.117.1.1 59608 1t6t1 118 65.50 2igbA 179 65.76 3bs5A 106 65.94 3bkbA 377 67.50 1kk1A 410 69.59 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2bgsA 344 70.31 2d9iA 96 73.36 1mjcA 69 73.90 b.40.4.5 25319 2ax4A 198 76.98 2zbvA 263 77.34 2a6cA 83 77.81 a.35.1.13 126236 1qksA 567 78.27 a.3.1.2,b.70.2.1 15951,27710 1hw1A 239 78.34 a.4.5.6,a.78.1.1 16111,18441 1rzmA 338 80.11 c.1.10.4 105137 1dmgA 225 81.21 c.22.1.1 31036 2hs5A 239 83.27 1wqaA 455 84.42 2p2uA 171 85.54 2joyA 96 86.69 2g8mA 264 87.32 2j3tD 219 87.47 2ehjA 208 88.84 2fvtA 135 88.88 c.103.1.1 134225 1k0rA 366 89.10 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964