# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tp5A	119	3.51e-12	b.36.1.1	119305
1be9A	119	4.62e-12	b.36.1.1	24774
2he2A	102	4.74e-12		
2qg1A	92	5.78e-12		
2ozfA	92	9.85e-12		
1g9oA	91	1.11e-11	b.36.1.1	60400
2i1nA	102	1.13e-11		
2iwnA	97	1.44e-11		
1n7eA	97	1.68e-11	b.36.1.1	91691
2opgA	98	1.77e-11		
1qauA	112	1.78e-11	b.36.1.1	24779
2he4A	90	2.07e-11		
2qt5A	200	2.15e-11		
2v90A	96	2.35e-11		
2fneA	117	2.44e-11	b.36.1.1	133813
2qkvA	96	2.78e-11		
2jilA	97	3.03e-11		
1qavA	90	3.56e-11	b.36.1.1	24777
2awxA	105	3.65e-11		
2fe5A	94	3.86e-11	b.36.1.1	133323
1kwaA	88	4.35e-11	b.36.1.1	24772
2jikA	101	4.73e-11		
2fcfA	103	5.79e-11	b.36.1.1	133267
2ocsA	88	5.99e-11		
2gzvA	114	6.10e-11		
1ihjA	98	8.21e-11	b.36.1.1	62382
1l6oA	95	9.56e-11	b.36.1.1	84534
2iwoA	120	1.01e-10		
2q3gA	89	1.26e-10		
2f0aA	98	1.43e-10	b.36.1.1	132661
2f5yA	91	1.75e-10	b.36.1.1	133015
2pktA	91	1.84e-10		
1wf7A	103	1.96e-10	b.36.1.1	114577
1q3oA	109	2.84e-10	b.36.1.1	95700
2h2bA	107	2.87e-10		
2reyA	100	2.98e-10		
2vphA	100	3.46e-10		
2egoA	96	3.57e-10		
2i04A	85	3.89e-10		
2uzcA	88	4.06e-10		
1x45A	98	4.18e-10	b.36.1.1	121679
2q9vA	90	4.83e-10		
2h3lA	103	5.14e-10	b.36.1.1	136046
1fc6A	388	5.89e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	6.32e-10		
2rczA	81	6.35e-10		
2pa1A	87	6.71e-10		
1v5lA	103	7.15e-10	b.36.1.1	108378
1r6jA	82	8.11e-10	b.36.1.1	97151
1mfgA	95	2.00e-09	b.36.1.1	79043
1nf3C	128	2.41e-09	b.36.1.1	85596
2eaqA	90	1.10e-08		
2z9iA	324	3.29e-05		
2p3wA	112	7.48e-05		
1y8tA	324	0.000111	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.000465	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	0.001371	b.55.1.1	126599
1te0A	318	0.001674	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.004118	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.09397	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3009	c.14.1.2	66425
2i6vA	87	0.4884		
2p1zA	180	1.128		
2rgqA	144	2.142		
1ha1	184	4.310		
2g8mA	264	5.368		
1vchA	175	5.688	c.61.1.1	119980
2g8oA	264	5.965	d.117.1.1	134779
1qqqA	264	6.211	d.117.1.1	40931
1evfA	264	6.382	d.117.1.1	40932
1hvyA	288	7.493	d.117.1.1	41049
1g2qA	187	8.041	c.61.1.1	65117
2dkaA	544	8.316		
1bkpA	278	8.422	d.117.1.1	41029
2ps1A	226	8.606		
1ypvA	313	9.468		
1l1qA	186	10.74	c.61.1.1	77653
2yzkA	178	11.92		
3dahA	319	13.62		
1f28A	297	15.38	d.117.1.1	59608
2e3dA	302	16.33		
2aeeA	211	16.98	c.61.1.1	126620
1l3kA	196	19.60	d.58.7.1,d.58.7.1	73539,73540
1dkuA	317	24.82	c.61.1.2,c.61.1.2	34118,34119
2gebA	185	24.96		
1l5jA	865	25.24	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1vjnA	220	25.71	d.157.1.4	100825
1ev5A	264	26.37	d.117.1.1	40935
1c9oA	66	26.62	b.40.4.5	25325
2jbhA	225	27.61		
2d5wA	603	28.15		
2dy0A	190	32.10		
1b5eA	246	33.88	d.117.1.1	41056
1cjbA	231	33.89	c.61.1.1	34079
2orwA	184	34.09		
2akaB	299	35.50	c.37.1.8	126914
1zn8A	180	38.44	c.61.1.1	125376
1fxlA	167	39.10	d.58.7.1,d.58.7.1	39183,39184
1o5oA	221	39.75	c.61.1.1	92509
2ywkA	95	41.22		
2hcrA	326	41.47		
1bd3A	243	41.95	c.61.1.1	34098
1mw9X	592	42.92	e.10.1.1	91480
1u9yA	284	45.04	c.61.1.2,c.61.1.2	119655,119656
3pmgA	561	45.58	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
1uldA	150	47.63	b.29.1.3	99545
2z1cA	75	47.87		
2fvtA	135	49.96	c.103.1.1	134225
1t71A	281	53.26	d.159.1.9	112283
2yyhA	139	54.32		
1mjc	69	56.95		
1dmgA	225	61.02	c.22.1.1	31036
1krhA	338	61.48	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1w30A	201	65.02	c.61.1.1	114118
2ax4A	198	65.05		
1vraB	215	65.39		
2vliA	183	67.53		
2adcA	229	67.85	d.58.7.1,d.58.7.1	126582,126583
1qm9A	198	68.91	d.58.7.1,d.58.7.1	39207,39208
1j7jA	178	69.06	c.61.1.1	84131
2yy7A	312	73.84		
1wd5A	208	77.02	c.61.1.1	114524
1n3jA	119	80.37	b.85.7.2	79963
1rzmA	338	80.41	c.1.10.4	105137
2etjA	250	81.49	c.55.3.1	132360
2ganA	190	82.65	d.108.1.1	134889
2blnA	305	83.47	b.46.1.1,c.65.1.1	128734,128735
2ehjA	208	87.14		
2go9A	161	88.22		
3bs5A	106	88.53		
1lvwA	295	89.28	c.68.1.6	84723