# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tp5A 119 2.13e-11 b.36.1.1 119305 2he2A 102 2.49e-11 1be9A 119 3.16e-11 b.36.1.1 24774 2qg1A 92 3.87e-11 2i1nA 102 5.54e-11 2ozfA 92 6.15e-11 2iwnA 97 8.39e-11 1g9oA 91 8.43e-11 b.36.1.1 60400 1n7eA 97 9.65e-11 b.36.1.1 91691 1qauA 112 9.72e-11 b.36.1.1 24779 2qt5A 200 1.00e-10 2opgA 98 1.08e-10 2he4A 90 1.29e-10 2qkvA 96 1.34e-10 2fneA 117 1.40e-10 b.36.1.1 133813 2jilA 97 1.42e-10 1qavA 90 1.43e-10 b.36.1.1 24777 2v90A 96 1.62e-10 2awxA 105 1.66e-10 2fe5A 94 1.85e-10 b.36.1.1 133323 2jikA 101 1.95e-10 1kwaA 88 2.01e-10 b.36.1.1 24772 2fcfA 103 2.05e-10 b.36.1.1 133267 1ihjA 98 2.81e-10 b.36.1.1 62382 2gzvA 114 2.82e-10 2ocsA 88 3.24e-10 1l6oA 95 4.35e-10 b.36.1.1 84534 2iwoA 120 4.55e-10 2q3gA 89 5.58e-10 2f0aA 98 7.47e-10 b.36.1.1 132661 2f5yA 91 8.87e-10 b.36.1.1 133015 1wf7A 103 1.05e-09 b.36.1.1 114577 2pktA 91 1.07e-09 2reyA 100 1.24e-09 2h2bA 107 1.38e-09 1x45A 98 1.42e-09 b.36.1.1 121679 1q3oA 109 1.51e-09 b.36.1.1 95700 2i04A 85 1.77e-09 2uzcA 88 1.88e-09 2rczA 81 2.01e-09 2q9vA 90 2.07e-09 2egoA 96 2.09e-09 2vphA 100 2.21e-09 2h3lA 103 2.31e-09 b.36.1.1 136046 1fc6A 388 3.04e-09 b.36.1.3,c.14.1.2 64738,64739 2pa1A 87 3.40e-09 3bpuA 88 4.10e-09 1v5lA 103 4.13e-09 b.36.1.1 108378 1r6jA 82 5.06e-09 b.36.1.1 97151 1mfgA 95 6.86e-09 b.36.1.1 79043 1nf3C 128 9.81e-09 b.36.1.1 85596 2eaqA 90 4.69e-08 2z9iA 324 0.000127 2p3wA 112 0.000274 1y8tA 324 0.000511 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 0.001087 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 0.002202 b.55.1.1 126599 1te0A 318 0.004049 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.01081 b.36.1.4,b.47.1.1 105852,105853 1k32A 1045 0.2183 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.4513 c.14.1.2 66425 2p1zA 180 1.113 2i6vA 87 1.603 2rgqA 144 5.310 2dkaA 544 5.747 2ps1A 226 6.025 1g2qA 187 7.326 c.61.1.1 65117 1vchA 175 7.341 c.61.1.1 119980 1l1qA 186 8.353 c.61.1.1 77653 1evfA 264 10.74 d.117.1.1 40932 1ha1 184 10.88 1qqqA 264 10.99 d.117.1.1 40931 1hvyA 288 11.32 d.117.1.1 41049 2g8mA 264 12.13 2g8oA 264 12.48 d.117.1.1 134779 2yzkA 178 12.73 1ypvA 313 12.82 1bkpA 278 14.34 d.117.1.1 41029 2aeeA 211 15.13 c.61.1.1 126620 3dahA 319 15.41 2e3dA 302 15.99 2jbhA 225 19.08 1cjbA 231 25.52 c.61.1.1 34079 1l5jA 865 25.97 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2gebA 185 26.31 1dkuA 317 26.61 c.61.1.2,c.61.1.2 34118,34119 1c9oA 66 29.07 b.40.4.5 25325 1f28A 297 29.35 d.117.1.1 59608 1zn8A 180 29.70 c.61.1.1 125376 2dy0A 190 30.02 2d5wA 603 33.55 1vjnA 220 35.82 d.157.1.4 100825 2fvtA 135 37.74 c.103.1.1 134225 2orwA 184 37.90 1l3kA 196 41.58 d.58.7.1,d.58.7.1 73539,73540 3pmgA 561 41.82 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1b5eA 246 45.90 d.117.1.1 41056 1u9yA 284 47.58 c.61.1.2,c.61.1.2 119655,119656 1ev5A 264 48.05 d.117.1.1 40935 2hcrA 326 50.52 1o5oA 221 52.50 c.61.1.1 92509 1j7jA 178 55.35 c.61.1.1 84131 2adcA 229 55.44 d.58.7.1,d.58.7.1 126582,126583 2vliA 183 56.24 1qm9A 198 59.78 d.58.7.1,d.58.7.1 39207,39208 1fxlA 167 59.81 d.58.7.1,d.58.7.1 39183,39184 2akaB 299 62.38 c.37.1.8 126914 1mjc 69 63.58 2otmA 154 64.96 1bd3A 243 68.67 c.61.1.1 34098 1krhA 338 69.11 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2btuA 346 69.58 1wqaA 455 71.55 1tuoA 464 74.33 1w30A 201 76.00 c.61.1.1 114118 2etjA 250 76.40 c.55.3.1 132360 1wd5A 208 81.43 c.61.1.1 114524 1fsgA 233 85.91 c.61.1.1 34029 2yyhA 139 86.08 2ax4A 198 86.22 2blnA 305 86.83 b.46.1.1,c.65.1.1 128734,128735 1dmgA 225 89.22 c.22.1.1 31036