# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tp5A	119	1.95e-11	b.36.1.1	119305
2he2A	102	2.24e-11		
1be9A	119	3.08e-11	b.36.1.1	24774
2qg1A	92	3.17e-11		
2i1nA	102	4.98e-11		
2ozfA	92	6.57e-11		
1n7eA	97	7.10e-11	b.36.1.1	91691
2iwnA	97	7.28e-11		
2qt5A	200	8.19e-11		
1qauA	112	8.77e-11	b.36.1.1	24779
2opgA	98	9.08e-11		
1g9oA	91	9.76e-11	b.36.1.1	60400
2jilA	97	9.97e-11		
2fneA	117	1.05e-10	b.36.1.1	133813
2qkvA	96	1.18e-10		
1qavA	90	1.19e-10	b.36.1.1	24777
2he4A	90	1.28e-10		
2awxA	105	1.58e-10		
2fe5A	94	1.59e-10	b.36.1.1	133323
2v90A	96	1.64e-10		
1kwaA	88	1.79e-10	b.36.1.1	24772
2fcfA	103	1.88e-10	b.36.1.1	133267
2jikA	101	2.01e-10		
2gzvA	114	2.27e-10		
1ihjA	98	2.28e-10	b.36.1.1	62382
2iwoA	120	3.12e-10		
1l6oA	95	3.33e-10	b.36.1.1	84534
2ocsA	88	3.35e-10		
2f0aA	98	5.16e-10	b.36.1.1	132661
2q3gA	89	5.39e-10		
1wf7A	103	7.42e-10	b.36.1.1	114577
2f5yA	91	8.36e-10	b.36.1.1	133015
2reyA	100	9.58e-10		
2pktA	91	1.01e-09		
1x45A	98	1.08e-09	b.36.1.1	121679
2h2bA	107	1.17e-09		
2q9vA	90	1.40e-09		
1q3oA	109	1.50e-09	b.36.1.1	95700
2rczA	81	1.51e-09		
2i04A	85	1.52e-09		
2h3lA	103	1.72e-09	b.36.1.1	136046
2uzcA	88	1.92e-09		
2vphA	100	2.00e-09		
2egoA	96	2.21e-09		
1fc6A	388	3.05e-09	b.36.1.3,c.14.1.2	64738,64739
2pa1A	87	3.12e-09		
1v5lA	103	3.13e-09	b.36.1.1	108378
3bpuA	88	3.36e-09		
1r6jA	82	4.07e-09	b.36.1.1	97151
1mfgA	95	5.14e-09	b.36.1.1	79043
1nf3C	128	6.27e-09	b.36.1.1	85596
2eaqA	90	4.14e-08		
2z9iA	324	0.000140		
2p3wA	112	0.000273		
1y8tA	324	0.000554	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.001154	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	0.002392	b.55.1.1	126599
1te0A	318	0.004349	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.008867	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.2229	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.5442	c.14.1.2	66425
2p1zA	180	1.319		
2i6vA	87	1.656		
2rgqA	144	6.050		
1g2qA	187	6.697	c.61.1.1	65117
1ha1	184	7.122		
2dkaA	544	8.307		
1vchA	175	9.271	c.61.1.1	119980
1l1qA	186	9.483	c.61.1.1	77653
2ps1A	226	9.484		
1evfA	264	9.811	d.117.1.1	40932
1qqqA	264	11.93	d.117.1.1	40931
2g8mA	264	13.38		
2yzkA	178	13.90		
2g8oA	264	13.98	d.117.1.1	134779
1hvyA	288	17.30	d.117.1.1	41049
2e3dA	302	18.02		
1l5jA	865	21.56	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1bkpA	278	21.97	d.117.1.1	41029
2aeeA	211	22.56	c.61.1.1	126620
3dahA	319	24.61		
1ypvA	313	25.17		
2dy0A	190	25.23		
2jbhA	225	29.66		
1c9oA	66	29.69	b.40.4.5	25325
1l3kA	196	30.23	d.58.7.1,d.58.7.1	73539,73540
2gebA	185	32.68		
1dkuA	317	32.93	c.61.1.2,c.61.1.2	34118,34119
2d5wA	603	34.76		
2orwA	184	36.40		
1zn8A	180	39.87	c.61.1.1	125376
2fvtA	135	41.08	c.103.1.1	134225
1cjbA	231	43.96	c.61.1.1	34079
1vjnA	220	46.38	d.157.1.4	100825
1bd3A	243	48.33	c.61.1.1	34098
1f28A	297	49.69	d.117.1.1	59608
1o5oA	221	51.74	c.61.1.1	92509
1ev5A	264	53.81	d.117.1.1	40935
2akaB	299	55.58	c.37.1.8	126914
3pmgA	561	57.20	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2etjA	250	60.06	c.55.3.1	132360
1b5eA	246	60.58	d.117.1.1	41056
2otmA	154	61.38		
1qm9A	198	62.14	d.58.7.1,d.58.7.1	39207,39208
1mjc	69	63.30		
2hcrA	326	63.62		
1vraB	215	63.95		
1fxlA	167	67.02	d.58.7.1,d.58.7.1	39183,39184
1u9yA	284	67.62	c.61.1.2,c.61.1.2	119655,119656
2adcA	229	69.95	d.58.7.1,d.58.7.1	126582,126583
1krhA	338	70.96	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1w30A	201	71.20	c.61.1.1	114118
1dmgA	225	72.92	c.22.1.1	31036
2yyhA	139	76.72		
1mw9X	592	77.01	e.10.1.1	91480
1j7jA	178	78.81	c.61.1.1	84131
2blnA	305	80.64	b.46.1.1,c.65.1.1	128734,128735
2vliA	183	83.48		
3bs5A	106	85.44		
2vgaA	207	85.57		
2ganA	190	86.96	d.108.1.1	134889
2ywkA	95	87.06