# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	2.71e-11		
1tp5A	119	3.52e-11	b.36.1.1	119305
2qg1A	92	3.56e-11		
2ozfA	92	4.75e-11		
1be9A	119	5.09e-11	b.36.1.1	24774
2i1nA	102	5.32e-11		
1qavA	90	5.51e-11	b.36.1.1	24777
1g9oA	91	6.72e-11	b.36.1.1	60400
2iwnA	97	7.81e-11		
1n7eA	97	8.00e-11	b.36.1.1	91691
1ihjA	98	8.06e-11	b.36.1.1	62382
2jilA	97	9.76e-11		
2fcfA	103	9.86e-11	b.36.1.1	133267
2v90A	96	1.02e-10		
2opgA	98	1.07e-10		
2he4A	90	1.14e-10		
1qauA	112	1.17e-10	b.36.1.1	24779
2fneA	117	1.33e-10	b.36.1.1	133813
2qt5A	200	1.33e-10		
2jikA	101	1.34e-10		
2awxA	105	1.36e-10		
2qkvA	96	1.44e-10		
2fe5A	94	1.54e-10	b.36.1.1	133323
2gzvA	114	1.59e-10		
1kwaA	88	1.96e-10	b.36.1.1	24772
2f0aA	98	2.30e-10	b.36.1.1	132661
1l6oA	95	2.44e-10	b.36.1.1	84534
2ocsA	88	2.97e-10		
2q3gA	89	3.24e-10		
1x45A	98	3.54e-10	b.36.1.1	121679
1wf7A	103	3.99e-10	b.36.1.1	114577
2iwoA	120	4.43e-10		
2reyA	100	4.44e-10		
2f5yA	91	4.55e-10	b.36.1.1	133015
2h2bA	107	5.54e-10		
2q9vA	90	5.55e-10		
2i04A	85	5.71e-10		
2pktA	91	7.31e-10		
2uzcA	88	8.73e-10		
1q3oA	109	9.06e-10	b.36.1.1	95700
2h3lA	103	1.02e-09	b.36.1.1	136046
2vphA	100	1.10e-09		
2egoA	96	1.26e-09		
1mfgA	95	1.65e-09	b.36.1.1	79043
2pa1A	87	1.73e-09		
1v5lA	103	1.85e-09	b.36.1.1	108378
3bpuA	88	2.09e-09		
1r6jA	82	2.35e-09	b.36.1.1	97151
2rczA	81	8.28e-09		
1nf3C	128	1.37e-08	b.36.1.1	85596
1fc6A	388	4.04e-08	b.36.1.3,c.14.1.2	64738,64739
2eaqA	90	7.02e-08		
2z9iA	324	6.26e-05		
2p3wA	112	0.000380		
1y8tA	324	0.000586	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.001207	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.004874	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.006429	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.07043	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2adzA	178	0.08488	b.55.1.1	126599
2i6vA	87	0.5351		
1j7xA	302	4.823	c.14.1.2	66425
1ha1	184	13.73		
2p1zA	180	17.65		
1ypvA	313	17.99		
1qqqA	264	19.40	d.117.1.1	40931
1evfA	264	22.50	d.117.1.1	40932
1g2qA	187	26.99	c.61.1.1	65117
2ps1A	226	28.72		
2g8mA	264	30.83		
2d9iA	96	37.18		
2g8oA	264	38.23	d.117.1.1	134779
2gebA	185	43.61		
1hvyA	288	47.37	d.117.1.1	41049
2btuA	346	48.18		
1vchA	175	48.79	c.61.1.1	119980
1f28A	297	52.03	d.117.1.1	59608
2dkaA	544	58.09		
2yy7A	312	60.53		
1ypxA	375	68.50		
1ev5A	264	68.89	d.117.1.1	40935
2yzkA	178	69.00		
2aeeA	211	69.56	c.61.1.1	126620
1zavA	180	69.68		
2ax4A	198	75.67		
1bkpA	278	76.13	d.117.1.1	41029
2dt8A	280	77.09		
3bs5A	106	79.12		
1l1qA	186	85.77	c.61.1.1	77653
1wexA	104	88.73	d.58.7.1	114568