# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	1.73e-11		
1tp5A	119	2.04e-11	b.36.1.1	119305
1be9A	119	2.90e-11	b.36.1.1	24774
2qg1A	92	3.53e-11		
2ozfA	92	5.58e-11		
2i1nA	102	6.51e-11		
1g9oA	91	7.23e-11	b.36.1.1	60400
2iwnA	97	7.53e-11		
2jilA	97	8.44e-11		
2opgA	98	9.81e-11		
1qauA	112	1.05e-10	b.36.1.1	24779
2awxA	105	1.26e-10		
2fneA	117	1.29e-10	b.36.1.1	133813
2he4A	90	1.29e-10		
2qkvA	96	1.43e-10		
2qt5A	200	1.48e-10		
2v90A	96	1.51e-10		
2fe5A	94	1.91e-10	b.36.1.1	133323
2jikA	101	2.17e-10		
1qavA	90	2.20e-10	b.36.1.1	24777
1n7eA	97	2.23e-10	b.36.1.1	91691
2fcfA	103	2.53e-10	b.36.1.1	133267
1kwaA	88	2.61e-10	b.36.1.1	24772
2gzvA	114	3.32e-10		
2iwoA	120	3.52e-10		
2ocsA	88	3.77e-10		
1ihjA	98	4.18e-10	b.36.1.1	62382
1l6oA	95	5.80e-10	b.36.1.1	84534
2f0aA	98	5.92e-10	b.36.1.1	132661
2q3gA	89	6.10e-10		
2reyA	100	1.10e-09		
2f5yA	91	1.18e-09	b.36.1.1	133015
2pktA	91	1.29e-09		
2h2bA	107	1.46e-09		
1wf7A	103	1.89e-09	b.36.1.1	114577
2h3lA	103	1.90e-09	b.36.1.1	136046
1q3oA	109	1.91e-09	b.36.1.1	95700
2vphA	100	2.16e-09		
2uzcA	88	2.25e-09		
2i04A	85	2.25e-09		
2q9vA	90	2.30e-09		
1x45A	98	2.40e-09	b.36.1.1	121679
2rczA	81	2.57e-09		
3bpuA	88	2.72e-09		
2egoA	96	2.89e-09		
1r6jA	82	4.06e-09	b.36.1.1	97151
1v5lA	103	4.80e-09	b.36.1.1	108378
2pa1A	87	5.12e-09		
1fc6A	388	5.50e-09	b.36.1.3,c.14.1.2	64738,64739
1mfgA	95	7.83e-09	b.36.1.1	79043
1nf3C	128	8.69e-09	b.36.1.1	85596
2eaqA	90	4.01e-08		
2z9iA	324	8.41e-05		
2p3wA	112	0.000300		
1y8tA	324	0.000360	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.001570	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.002555	b.36.1.4,b.47.1.1	112400,112401
2adzA	178	0.003508	b.55.1.1	126599
1sotA	320	0.009154	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.04047	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	0.4860		
1j7xA	302	0.4861	c.14.1.2	66425
2p1zA	180	0.8936		
2rgqA	144	3.928		
2ps1A	226	4.095		
1ha1	184	4.798		
1g2qA	187	5.678	c.61.1.1	65117
1vchA	175	6.598	c.61.1.1	119980
1evfA	264	7.094	d.117.1.1	40932
2g8mA	264	7.699		
2aeeA	211	8.193	c.61.1.1	126620
1qqqA	264	8.603	d.117.1.1	40931
2g8oA	264	9.216	d.117.1.1	134779
2dkaA	544	9.720		
2yzkA	178	10.04		
1hvyA	288	14.94	d.117.1.1	41049
1ypvA	313	16.74		
2gebA	185	21.21		
2dy0A	190	21.49		
3dahA	319	22.31		
1l1qA	186	22.73	c.61.1.1	77653
2jbhA	225	23.44		
1l5jA	865	24.82	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1fxlA	167	24.85	d.58.7.1,d.58.7.1	39183,39184
1l3kA	196	25.17	d.58.7.1,d.58.7.1	73539,73540
1c9oA	66	26.85	b.40.4.5	25325
1bkpA	278	28.01	d.117.1.1	41029
1cjbA	231	31.24	c.61.1.1	34079
2e3dA	302	33.84		
2adcA	229	34.33	d.58.7.1,d.58.7.1	126582,126583
2akaB	299	34.67	c.37.1.8	126914
2hcrA	326	37.45		
1zn8A	180	38.39	c.61.1.1	125376
2vliA	183	41.42		
1uldA	150	43.07	b.29.1.3	99545
1ev5A	264	44.28	d.117.1.1	40935
1fsgA	233	44.57	c.61.1.1	34029
2z1cA	75	45.22		
1qb7A	236	46.61	c.61.1.1	34087
2d5wA	603	46.99		
1qksA	567	47.79	a.3.1.2,b.70.2.1	15951,27710
2orwA	184	49.13		
2ywkA	95	50.12		
1f28A	297	50.34	d.117.1.1	59608
1vjnA	220	50.82	d.157.1.4	100825
3bs5A	106	54.36		
2etjA	250	55.89	c.55.3.1	132360
1j7jA	178	59.44	c.61.1.1	84131
1b5eA	246	62.62	d.117.1.1	41056
1vraB	215	67.96		
1w30A	201	73.22	c.61.1.1	114118
3cpkA	150	74.65		
1rzmA	338	75.29	c.1.10.4	105137
1dkuA	317	75.35	c.61.1.2,c.61.1.2	34118,34119
1wd5A	208	75.72	c.61.1.1	114524
3pmgA	561	77.14	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2jsnA	96	77.73		
1mw9X	592	78.29	e.10.1.1	91480
1dmgA	225	79.15	c.22.1.1	31036
2yyhA	139	80.64		
1vdmA	153	80.74	c.61.1.1	119994
1mjc	69	82.02		
1krhA	338	82.08	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1t71A	281	83.17	d.159.1.9	112283
2q6kA	283	88.14		
2hs5A	239	88.29