# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 6.58e-13 1tp5A 119 1.18e-12 b.36.1.1 119305 2jilA 97 1.68e-12 2qg1A 92 1.97e-12 2iwoA 120 3.32e-12 1be9A 119 3.87e-12 b.36.1.1 24774 1qavA 90 4.36e-12 b.36.1.1 24777 2iwnA 97 4.63e-12 2i1nA 102 4.86e-12 2ozfA 92 4.90e-12 1kwaA 88 5.92e-12 b.36.1.1 24772 1g9oA 91 6.35e-12 b.36.1.1 60400 2opgA 98 7.76e-12 1qauA 112 8.80e-12 b.36.1.1 24779 2qt5A 200 9.15e-12 2qkvA 96 9.63e-12 1n7eA 97 1.11e-11 b.36.1.1 91691 2he4A 90 1.16e-11 2awxA 105 1.17e-11 2fe5A 94 1.33e-11 b.36.1.1 133323 2gzvA 114 1.58e-11 2jikA 101 1.62e-11 2v90A 96 1.68e-11 2fcfA 103 1.72e-11 b.36.1.1 133267 2fneA 117 2.45e-11 b.36.1.1 133813 1ihjA 98 2.56e-11 b.36.1.1 62382 1wf7A 103 3.02e-11 b.36.1.1 114577 2ocsA 88 3.23e-11 2q3gA 89 5.22e-11 1l6oA 95 5.61e-11 b.36.1.1 84534 2pktA 91 6.77e-11 2vphA 100 1.01e-10 2f0aA 98 1.01e-10 b.36.1.1 132661 2reyA 100 1.07e-10 1q3oA 109 1.29e-10 b.36.1.1 95700 2f5yA 91 1.48e-10 b.36.1.1 133015 1x45A 98 1.54e-10 b.36.1.1 121679 2i04A 85 1.60e-10 2q9vA 90 1.60e-10 2h2bA 107 1.78e-10 2rczA 81 1.82e-10 2uzcA 88 1.94e-10 2h3lA 103 2.32e-10 b.36.1.1 136046 2egoA 96 2.84e-10 3bpuA 88 3.77e-10 2pa1A 87 3.90e-10 1r6jA 82 4.08e-10 b.36.1.1 97151 1nf3C 128 4.36e-10 b.36.1.1 85596 1v5lA 103 6.90e-10 b.36.1.1 108378 1mfgA 95 7.74e-10 b.36.1.1 79043 2eaqA 90 2.49e-09 1fc6A 388 2.31e-07 b.36.1.3,c.14.1.2 64738,64739 2p3wA 112 0.000166 1lcyA 325 0.000541 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 0.002298 b.55.1.1 126599 1te0A 318 0.06879 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.4803 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 0.6331 2p1zA 180 0.9567 2aeeA 211 1.743 c.61.1.1 126620 2dkaA 544 1.961 1l1qA 186 2.201 c.61.1.1 77653 2z9iA 324 2.202 1ha1 184 3.106 1j7xA 302 3.432 c.14.1.2 66425 1g2qA 187 3.595 c.61.1.1 65117 1sotA 320 3.707 b.36.1.4,b.47.1.1 105852,105853 2ps1A 226 4.640 1vchA 175 5.383 c.61.1.1 119980 2ganA 190 5.582 d.108.1.1 134889 2rgqA 144 6.566 1l3kA 196 9.182 d.58.7.1,d.58.7.1 73539,73540 2gj2A 85 9.511 1l5jA 865 10.92 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2dy0A 190 11.07 1xrsA 516 11.46 c.1.19.4 115883 3b5mA 205 11.91 1byiA 224 12.61 c.37.1.10 32199 2yzkA 178 12.69 2d1gA 498 13.05 1b5eA 246 14.89 d.117.1.1 41056 2e3dA 302 14.94 2akaB 299 15.21 c.37.1.8 126914 1zunB 434 15.40 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2imhA 231 16.07 1zh5A 195 16.92 a.4.5.46,d.58.7.1 125073,125074 1zn8A 180 16.93 c.61.1.1 125376 1j7jA 178 17.00 c.61.1.1 84131 2gebA 185 19.91 1qksA 567 22.56 a.3.1.2,b.70.2.1 15951,27710 3b3qE 197 25.16 2epgA 487 25.32 2orwA 184 27.63 2adbA 148 27.90 d.58.7.1 126581 2vesA 299 29.03 1yqtA 538 29.08 1gzwA 134 29.09 b.29.1.3 90535 2d5wA 603 31.58 1l2uA 245 31.72 c.1.2.3 73516 1qb7A 236 31.96 c.61.1.1 34087 1c9oA 66 34.57 b.40.4.5 25325 2jbhA 225 34.75 3cpkA 150 35.06 2dx0A 138 35.86 1p0kA 349 35.91 c.1.4.1 87648 1fjmA 330 36.57 d.159.1.3 42082 2hkjA 469 37.76 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2pia 321 38.12 2drhA 361 38.26 2r6fA 972 38.29 2jabA 136 38.48 3bpkA 206 39.14 1mjc 69 40.18 1vjnA 220 40.74 d.157.1.4 100825 1se8A 301 41.17 b.40.4.3 105448 1oqvA 192 43.97 d.24.1.2 87320 1uqwA 509 44.02 c.94.1.1 99799 1dkuA 317 44.43 c.61.1.2,c.61.1.2 34118,34119 1tuoA 464 45.72 1y0bA 197 52.09 c.61.1.1 122476 1k87A 669 52.53 a.176.1.1,c.1.23.2 77286,77287 1s31A 273 55.54 3b9gA 328 56.30 2ywkA 95 57.15 2rfmA 192 57.29 1u9yA 284 58.30 c.61.1.2,c.61.1.2 119655,119656 1uldA 150 60.85 b.29.1.3 99545 1jalA 363 61.39 c.37.1.8,d.15.10.2 84138,84139 1t1gA 364 61.50 c.41.1.2 106246 2pgeA 377 62.42 1w30A 201 62.42 c.61.1.1 114118 2e87A 357 63.22 1rzmA 338 63.98 c.1.10.4 105137 3cfuA 159 67.56 1vf8A 377 67.77 c.1.8.5,d.26.3.1 120029,120030 1wqaA 455 68.56 2i2cA 272 68.63 1fsgA 233 69.99 c.61.1.1 34029 2yyhA 139 70.89 1yp2A 451 72.03 b.81.1.4,c.68.1.6 123798,123799 1pieA 419 72.22 d.14.1.5,d.58.26.7 94706,94707 1ub3A 220 72.79 c.1.10.1 88395 1fpzA 212 74.69 c.45.1.1 59976 2ywuA 181 77.21 1cjaA 342 77.39 d.144.1.3 41708 1vc3B 97 77.40 1opr 213 77.68 1qhxA 178 77.72 c.37.1.3 31936 1yxaA 398 78.64 2z4sA 440 80.00 1ivnA 190 81.28 c.23.10.5 83719 1vdmA 153 82.86 c.61.1.1 119994 2ci9A 102 83.80 3bs5A 106 84.10 2ps2A 371 84.61 2blnA 305 84.94 b.46.1.1,c.65.1.1 128734,128735 1vraB 215 85.04 2ze0A 555 85.24 2z1cA 75 86.14 1xa0A 328 87.25 b.35.1.2,c.2.1.1 115021,115022 1s2wA 295 89.19 c.1.12.7 98407