# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	1.41e-11		
1tp5A	119	1.67e-11	b.36.1.1	119305
1be9A	119	2.02e-11	b.36.1.1	24774
2qg1A	92	2.21e-11		
2ozfA	92	4.57e-11		
2i1nA	102	4.66e-11		
2iwnA	97	4.68e-11		
1g9oA	91	6.21e-11	b.36.1.1	60400
1qauA	112	7.53e-11	b.36.1.1	24779
2opgA	98	7.78e-11		
2jilA	97	8.30e-11		
2awxA	105	9.17e-11		
2he4A	90	9.74e-11		
2qkvA	96	9.98e-11		
2fneA	117	1.04e-10	b.36.1.1	133813
2fe5A	94	1.22e-10	b.36.1.1	133323
2qt5A	200	1.39e-10		
2v90A	96	1.39e-10		
1kwaA	88	1.51e-10	b.36.1.1	24772
1n7eA	97	1.58e-10	b.36.1.1	91691
2jikA	101	1.75e-10		
2fcfA	103	1.77e-10	b.36.1.1	133267
1qavA	90	1.81e-10	b.36.1.1	24777
1ihjA	98	2.30e-10	b.36.1.1	62382
2gzvA	114	2.44e-10		
2ocsA	88	2.48e-10		
2iwoA	120	3.08e-10		
1l6oA	95	4.16e-10	b.36.1.1	84534
2f0aA	98	4.86e-10	b.36.1.1	132661
2q3gA	89	5.54e-10		
2reyA	100	6.94e-10		
2f5yA	91	9.75e-10	b.36.1.1	133015
2pktA	91	1.02e-09		
1q3oA	109	1.08e-09	b.36.1.1	95700
2h2bA	107	1.20e-09		
1x45A	98	1.35e-09	b.36.1.1	121679
1wf7A	103	1.44e-09	b.36.1.1	114577
2h3lA	103	1.54e-09	b.36.1.1	136046
2rczA	81	1.94e-09		
2egoA	96	1.96e-09		
2vphA	100	2.03e-09		
2q9vA	90	2.11e-09		
3bpuA	88	2.44e-09		
2i04A	85	2.49e-09		
2uzcA	88	2.72e-09		
1r6jA	82	3.16e-09	b.36.1.1	97151
1mfgA	95	4.24e-09	b.36.1.1	79043
1fc6A	388	4.63e-09	b.36.1.3,c.14.1.2	64738,64739
1nf3C	128	5.40e-09	b.36.1.1	85596
1v5lA	103	5.85e-09	b.36.1.1	108378
2pa1A	87	6.69e-09		
2eaqA	90	2.68e-08		
2z9iA	324	0.000107		
2p3wA	112	0.000301		
1y8tA	324	0.000516	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.002252	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	0.002346	b.55.1.1	126599
1te0A	318	0.003663	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.01169	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.1092	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.4492	c.14.1.2	66425
2p1zA	180	0.7651		
2i6vA	87	1.088		
2ps1A	226	3.289		
1g2qA	187	5.082	c.61.1.1	65117
2dkaA	544	5.954		
2rgqA	144	6.908		
2aeeA	211	7.583	c.61.1.1	126620
1vchA	175	8.447	c.61.1.1	119980
1evfA	264	8.920	d.117.1.1	40932
1ha1	184	8.937		
1qqqA	264	10.43	d.117.1.1	40931
2yzkA	178	10.47		
2g8mA	264	11.19		
2g8oA	264	13.24	d.117.1.1	134779
1l1qA	186	17.12	c.61.1.1	77653
1zn8A	180	20.12	c.61.1.1	125376
1hvyA	288	21.07	d.117.1.1	41049
1ypvA	313	21.43		
2gebA	185	21.57		
2jbhA	225	26.55		
1l5jA	865	27.07	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1c9oA	66	27.17	b.40.4.5	25325
2dy0A	190	28.24		
3dahA	319	29.28		
2adcA	229	30.48	d.58.7.1,d.58.7.1	126582,126583
2e3dA	302	31.29		
1cjbA	231	32.27	c.61.1.1	34079
2orwA	184	36.48		
1bkpA	278	37.86	d.117.1.1	41029
2d5wA	603	40.66		
1l3kA	196	42.01	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	44.72	d.58.7.1,d.58.7.1	39183,39184
1qb7A	236	45.60	c.61.1.1	34087
3bs5A	106	46.51		
2vliA	183	49.84		
1f28A	297	50.47	d.117.1.1	59608
1j7jA	178	50.89	c.61.1.1	84131
1fsgA	233	53.09	c.61.1.1	34029
2hcrA	326	53.50		
2yyhA	139	57.18		
3pmgA	561	58.98	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2z1cA	75	59.16		
1ev5A	264	59.34	d.117.1.1	40935
1vdmA	153	60.66	c.61.1.1	119994
1w30A	201	60.85	c.61.1.1	114118
1z7gA	217	64.25	c.61.1.1	124624
3cpkA	150	64.69		
2akaB	299	68.11	c.37.1.8	126914
1uldA	150	69.07	b.29.1.3	99545
1krhA	338	70.45	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2etjA	250	71.80	c.55.3.1	132360
1b5eA	246	77.23	d.117.1.1	41056
1mw9X	592	78.16	e.10.1.1	91480
2jfrA	234	80.51		
1vjnA	220	80.54	d.157.1.4	100825
1mjc	69	84.72		
3b5mA	205	86.11		
1wd5A	208	86.21	c.61.1.1	114524
2hs5A	239	88.94