# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	3.36e-12		
1tp5A	119	4.37e-12	b.36.1.1	119305
1be9A	119	5.20e-12	b.36.1.1	24774
2qg1A	92	6.96e-12		
2i1nA	102	1.02e-11		
2ozfA	92	1.24e-11		
1qauA	112	1.57e-11	b.36.1.1	24779
1g9oA	91	1.79e-11	b.36.1.1	60400
2iwnA	97	1.96e-11		
2jilA	97	2.06e-11		
1n7eA	97	2.32e-11	b.36.1.1	91691
2opgA	98	2.37e-11		
2qkvA	96	2.42e-11		
2qt5A	200	2.57e-11		
2he4A	90	3.01e-11		
1qavA	90	3.43e-11	b.36.1.1	24777
2jikA	101	3.73e-11		
2awxA	105	3.73e-11		
2fneA	117	3.91e-11	b.36.1.1	133813
1kwaA	88	4.39e-11	b.36.1.1	24772
2v90A	96	4.46e-11		
2fe5A	94	5.24e-11	b.36.1.1	133323
2fcfA	103	6.11e-11	b.36.1.1	133267
1ihjA	98	6.83e-11	b.36.1.1	62382
2gzvA	114	8.18e-11		
2ocsA	88	8.68e-11		
1l6oA	95	9.41e-11	b.36.1.1	84534
2iwoA	120	9.98e-11		
2f0aA	98	1.45e-10	b.36.1.1	132661
1wf7A	103	1.87e-10	b.36.1.1	114577
2q3gA	89	1.90e-10		
2rczA	81	2.20e-10		
1x45A	98	2.65e-10	b.36.1.1	121679
2reyA	100	2.81e-10		
2f5yA	91	2.90e-10	b.36.1.1	133015
2pktA	91	3.27e-10		
1q3oA	109	3.43e-10	b.36.1.1	95700
2q9vA	90	4.08e-10		
2h2bA	107	4.74e-10		
2i04A	85	4.78e-10		
2h3lA	103	5.47e-10	b.36.1.1	136046
1v5lA	103	5.49e-10	b.36.1.1	108378
2vphA	100	5.87e-10		
2egoA	96	6.44e-10		
2uzcA	88	7.74e-10		
1fc6A	388	9.36e-10	b.36.1.3,c.14.1.2	64738,64739
3bpuA	88	9.72e-10		
1r6jA	82	1.14e-09	b.36.1.1	97151
2pa1A	87	1.45e-09		
1nf3C	128	2.20e-09	b.36.1.1	85596
1mfgA	95	3.21e-09	b.36.1.1	79043
2eaqA	90	9.53e-09		
2z9iA	324	0.000103		
2p3wA	112	0.000291		
1y8tA	324	0.000541	b.36.1.4,b.47.1.1	122763,122764
2adzA	178	0.000696	b.55.1.1	126599
1lcyA	325	0.001895	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.003514	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.005863	b.36.1.4,b.47.1.1	105852,105853
1j7xA	302	0.3402	c.14.1.2	66425
1k32A	1045	1.131	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2i6vA	87	2.781		
2p1zA	180	3.041		
1ha1	184	4.569		
2rgqA	144	4.839		
1qqqA	264	7.797	d.117.1.1	40931
1g2qA	187	8.576	c.61.1.1	65117
1evfA	264	8.961	d.117.1.1	40932
1vchA	175	10.08	c.61.1.1	119980
2dkaA	544	10.25		
1f28A	297	11.52	d.117.1.1	59608
2g8mA	264	14.29		
1bkpA	278	14.81	d.117.1.1	41029
1hvyA	288	15.42	d.117.1.1	41049
2g8oA	264	15.62	d.117.1.1	134779
1fxlA	167	25.95	d.58.7.1,d.58.7.1	39183,39184
1c9oA	66	26.88	b.40.4.5	25325
1l1qA	186	27.24	c.61.1.1	77653
1l5jA	865	27.52	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2d5wA	603	28.21		
1l3kA	196	31.42	d.58.7.1,d.58.7.1	73539,73540
2e3dA	302	33.22		
2yzkA	178	34.63		
1vjnA	220	37.17	d.157.1.4	100825
1ev5A	264	37.89	d.117.1.1	40935
1b5eA	246	39.30	d.117.1.1	41056
1ypvA	313	40.03		
2ps1A	226	40.76		
1qm9A	198	42.06	d.58.7.1,d.58.7.1	39207,39208
2hs5A	239	42.37		
3dahA	319	43.45		
2adcA	229	45.39	d.58.7.1,d.58.7.1	126582,126583
2dy0A	190	47.14		
2etjA	250	47.49	c.55.3.1	132360
2fvtA	135	47.91	c.103.1.1	134225
2akaB	299	51.49	c.37.1.8	126914
1n3jA	119	53.90	b.85.7.2	79963
2orwA	184	62.48		
2otmA	154	63.77		
2vliA	183	66.19		
2yyhA	139	66.78		
1mjc	69	67.51		
2ywkA	95	67.82		
2ax4A	198	69.96		
2vgaA	207	70.92		
3cpkA	150	71.07		
1w30A	201	72.38	c.61.1.1	114118
1krhA	338	74.94	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1wd5A	208	79.72	c.61.1.1	114524
2gebA	185	82.39		
1uldA	150	82.45	b.29.1.3	99545
2yy7A	312	84.73		
2ganA	190	87.15	d.108.1.1	134889
1dmgA	225	88.11	c.22.1.1	31036