# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tp5A	119	5.43e-12	b.36.1.1	119305
2he2A	102	5.79e-12		
1be9A	119	6.64e-12	b.36.1.1	24774
2qg1A	92	1.02e-11		
2ozfA	92	1.16e-11		
2i1nA	102	1.21e-11		
1g9oA	91	1.78e-11	b.36.1.1	60400
1qauA	112	2.14e-11	b.36.1.1	24779
2iwnA	97	2.37e-11		
2v90A	96	2.66e-11		
2he4A	90	2.89e-11		
2opgA	98	3.15e-11		
1n7eA	97	3.19e-11	b.36.1.1	91691
2qt5A	200	3.69e-11		
2jilA	97	3.82e-11		
2qkvA	96	4.28e-11		
2jikA	101	5.28e-11		
2awxA	105	5.50e-11		
2fneA	117	5.51e-11	b.36.1.1	133813
1qavA	90	8.31e-11	b.36.1.1	24777
2fcfA	103	8.77e-11	b.36.1.1	133267
2fe5A	94	9.63e-11	b.36.1.1	133323
1kwaA	88	1.06e-10	b.36.1.1	24772
1ihjA	98	1.13e-10	b.36.1.1	62382
2ocsA	88	1.16e-10		
2iwoA	120	1.25e-10		
1l6oA	95	1.26e-10	b.36.1.1	84534
2gzvA	114	1.35e-10		
1q3oA	109	1.73e-10	b.36.1.1	95700
2f0aA	98	1.73e-10	b.36.1.1	132661
2q3gA	89	2.00e-10		
2rczA	81	2.33e-10		
2f5yA	91	2.76e-10	b.36.1.1	133015
1wf7A	103	2.80e-10	b.36.1.1	114577
1x45A	98	3.27e-10	b.36.1.1	121679
2h2bA	107	3.75e-10		
2h3lA	103	4.38e-10	b.36.1.1	136046
2reyA	100	4.76e-10		
2pktA	91	5.11e-10		
2egoA	96	5.14e-10		
2i04A	85	6.21e-10		
1fc6A	388	7.42e-10	b.36.1.3,c.14.1.2	64738,64739
2q9vA	90	7.79e-10		
3bpuA	88	8.05e-10		
1v5lA	103	8.16e-10	b.36.1.1	108378
2vphA	100	9.83e-10		
1r6jA	82	9.99e-10	b.36.1.1	97151
2pa1A	87	1.32e-09		
2uzcA	88	1.41e-09		
1mfgA	95	1.73e-09	b.36.1.1	79043
1nf3C	128	2.12e-09	b.36.1.1	85596
2eaqA	90	1.48e-08		
2z9iA	324	4.91e-05		
2p3wA	112	0.000222		
1y8tA	324	0.000329	b.36.1.4,b.47.1.1	122763,122764
1lcyA	325	0.001570	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	0.002002	b.55.1.1	126599
1te0A	318	0.002493	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.006364	b.36.1.4,b.47.1.1	105852,105853
1k32A	1045	0.2462	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3805	c.14.1.2	66425
2i6vA	87	1.363		
2p1zA	180	1.389		
2rgqA	144	4.189		
1vchA	175	7.035	c.61.1.1	119980
1g2qA	187	8.432	c.61.1.1	65117
1ha1	184	8.767		
1f28A	297	10.57	d.117.1.1	59608
2dkaA	544	12.99		
2ps1A	226	13.06		
2g8mA	264	13.18		
1evfA	264	14.04	d.117.1.1	40932
1qqqA	264	14.46	d.117.1.1	40931
2yzkA	178	15.75		
2g8oA	264	16.98	d.117.1.1	134779
2d5wA	603	20.19		
1hvyA	288	20.53	d.117.1.1	41049
2dy0A	190	22.21		
1bkpA	278	22.54	d.117.1.1	41029
3dahA	319	23.94		
2jbhA	225	24.35		
1ypvA	313	25.13		
2gebA	185	26.59		
1l5jA	865	26.70	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2e3dA	302	28.05		
1l1qA	186	28.95	c.61.1.1	77653
2aeeA	211	33.86	c.61.1.1	126620
1c9oA	66	35.62	b.40.4.5	25325
2yyhA	139	36.24		
1l3kA	196	36.96	d.58.7.1,d.58.7.1	73539,73540
1cjbA	231	46.74	c.61.1.1	34079
2etjA	250	48.95	c.55.3.1	132360
1vjnA	220	49.64	d.157.1.4	100825
1b5eA	246	49.66	d.117.1.1	41056
1wd5A	208	49.70	c.61.1.1	114524
2otmA	154	52.53		
2hs5A	239	52.62		
2adcA	229	58.03	d.58.7.1,d.58.7.1	126582,126583
2yy7A	312	59.17		
1vdmA	153	59.51	c.61.1.1	119994
1ev5A	264	60.24	d.117.1.1	40935
2pi6A	361	60.85		
1fxlA	167	60.86	d.58.7.1,d.58.7.1	39183,39184
1qm9A	198	61.57	d.58.7.1,d.58.7.1	39207,39208
2akaB	299	61.67	c.37.1.8	126914
2vliA	183	61.85		
2vgaA	207	62.13		
1krhA	338	62.58	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2ax4A	198	64.79		
3c7jA	237	65.99		
2z1cA	75	66.15		
2hcrA	326	72.26		
2zmvA	227	73.52		
2ywkA	95	76.38		
1u9yA	284	77.06	c.61.1.2,c.61.1.2	119655,119656
1o5oA	221	77.53	c.61.1.1	92509
1bplB	294	78.37	b.71.1.1	27716
2d9iA	96	81.37		
1mjc	69	81.39		
1zh5A	195	84.50	a.4.5.46,d.58.7.1	125073,125074
1ir6A	424	84.73	c.107.1.2	71342
1j7jA	178	86.03	c.61.1.1	84131
1vs0A	310	86.23		
3cfuA	159	88.50		
1o4uA	285	89.49	c.1.17.1,d.41.2.1	86624,86625
1fsgA	233	89.68	c.61.1.1	34029