# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 4.64e-12 1tp5A 119 5.49e-12 b.36.1.1 119305 1be9A 119 8.09e-12 b.36.1.1 24774 2i1nA 102 1.04e-11 2qg1A 92 1.06e-11 1g9oA 91 2.03e-11 b.36.1.1 60400 2ozfA 92 2.03e-11 1n7eA 97 2.11e-11 b.36.1.1 91691 2iwnA 97 2.28e-11 2qt5A 200 2.34e-11 1qauA 112 2.34e-11 b.36.1.1 24779 2opgA 98 2.44e-11 2fneA 117 2.90e-11 b.36.1.1 133813 2jilA 97 2.94e-11 2awxA 105 3.01e-11 2he4A 90 3.31e-11 2fe5A 94 3.84e-11 b.36.1.1 133323 2qkvA 96 4.31e-11 1qavA 90 4.62e-11 b.36.1.1 24777 1kwaA 88 4.68e-11 b.36.1.1 24772 2v90A 96 4.85e-11 2jikA 101 5.07e-11 1ihjA 98 6.93e-11 b.36.1.1 62382 2gzvA 114 8.51e-11 2ocsA 88 8.51e-11 2fcfA 103 8.90e-11 b.36.1.1 133267 2iwoA 120 1.40e-10 1l6oA 95 1.42e-10 b.36.1.1 84534 2f0aA 98 1.53e-10 b.36.1.1 132661 2f5yA 91 2.02e-10 b.36.1.1 133015 2rczA 81 2.08e-10 2q3gA 89 2.59e-10 2reyA 100 3.03e-10 1wf7A 103 3.04e-10 b.36.1.1 114577 2i04A 85 3.59e-10 2q9vA 90 3.73e-10 2h2bA 107 3.77e-10 1x45A 98 3.89e-10 b.36.1.1 121679 2h3lA 103 4.29e-10 b.36.1.1 136046 2pktA 91 4.52e-10 1q3oA 109 5.62e-10 b.36.1.1 95700 1v5lA 103 5.73e-10 b.36.1.1 108378 1r6jA 82 7.32e-10 b.36.1.1 97151 2egoA 96 7.64e-10 2vphA 100 7.75e-10 1fc6A 388 8.96e-10 b.36.1.3,c.14.1.2 64738,64739 3bpuA 88 1.03e-09 2uzcA 88 1.05e-09 2pa1A 87 1.42e-09 1mfgA 95 1.50e-09 b.36.1.1 79043 1nf3C 128 2.15e-09 b.36.1.1 85596 2eaqA 90 1.77e-08 2z9iA 324 4.82e-05 2p3wA 112 0.000127 1y8tA 324 0.000182 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 0.001251 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 0.001376 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.002088 b.36.1.4,b.47.1.1 105852,105853 2adzA 178 0.005792 b.55.1.1 126599 1k32A 1045 0.1385 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.2468 c.14.1.2 66425 2i6vA 87 1.047 2p1zA 180 1.440 2rgqA 144 3.253 1g2qA 187 4.370 c.61.1.1 65117 1vchA 175 4.631 c.61.1.1 119980 1ha1 184 8.447 2ps1A 226 12.66 2dkaA 544 15.88 1evfA 264 16.02 d.117.1.1 40932 1qqqA 264 17.04 d.117.1.1 40931 1f28A 297 17.32 d.117.1.1 59608 2yzkA 178 18.74 2adcA 229 21.09 d.58.7.1,d.58.7.1 126582,126583 2g8mA 264 21.53 2g8oA 264 22.90 d.117.1.1 134779 2jbhA 225 23.19 1l1qA 186 23.26 c.61.1.1 77653 2z1cA 75 23.56 1hvyA 288 23.92 d.117.1.1 41049 3dahA 319 24.41 2dy0A 190 24.48 1l5jA 865 25.19 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2aeeA 211 25.40 c.61.1.1 126620 1bkpA 278 25.96 d.117.1.1 41029 1l3kA 196 27.10 d.58.7.1,d.58.7.1 73539,73540 1c9oA 66 27.48 b.40.4.5 25325 2hs5A 239 28.81 2e3dA 302 30.13 2d5wA 603 31.15 2gebA 185 35.11 1fxlA 167 36.26 d.58.7.1,d.58.7.1 39183,39184 1wd5A 208 39.56 c.61.1.1 114524 1u9yA 284 52.66 c.61.1.2,c.61.1.2 119655,119656 1o5oA 221 52.97 c.61.1.1 92509 1w30A 201 52.99 c.61.1.1 114118 1ypvA 313 54.15 2otmA 154 54.19 2hcrA 326 58.83 2btuA 346 62.50 1cjbA 231 62.98 c.61.1.1 34079 2ax4A 198 64.68 1krhA 338 66.17 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1ev5A 264 67.04 d.117.1.1 40935 3cpkA 150 67.98 1l2uA 245 69.05 c.1.2.3 73516 1dkuA 317 69.49 c.61.1.2,c.61.1.2 34118,34119 2d9iA 96 72.72 2vgaA 207 74.13 1fsgA 233 75.19 c.61.1.1 34029 2blnA 305 79.18 b.46.1.1,c.65.1.1 128734,128735 2etjA 250 79.69 c.55.3.1 132360 1b5eA 246 80.16 d.117.1.1 41056 2zmvA 227 81.19 3bs5A 106 82.42 3dbwA 226 83.18 2joyA 96 83.39 1ir6A 424 84.46 c.107.1.2 71342 2vliA 183 84.82 2ywkA 95 86.06 2igbA 179 86.14 1qm9A 198 86.19 d.58.7.1,d.58.7.1 39207,39208 2q6kA 283 86.38 1vjnA 220 87.29 d.157.1.4 100825 3c7jA 237 89.32 2pi6A 361 89.84 1o4uA 285 89.91 c.1.17.1,d.41.2.1 86624,86625