# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2he2A	102	2.17e-11		
2i1nA	102	3.24e-11		
1n7eA	97	8.34e-11	b.36.1.1	91691
1tp5A	119	8.50e-11	b.36.1.1	119305
2jilA	97	1.10e-10		
2iwnA	97	1.24e-10		
2qt5A	200	1.56e-10		
2fe5A	94	1.56e-10	b.36.1.1	133323
1be9A	119	1.63e-10	b.36.1.1	24774
2opgA	98	1.76e-10		
2jikA	101	1.94e-10		
2qg1A	92	1.94e-10		
2fneA	117	2.02e-10	b.36.1.1	133813
2awxA	105	2.21e-10		
1qavA	90	2.24e-10	b.36.1.1	24777
1g9oA	91	2.33e-10	b.36.1.1	60400
2he4A	90	2.44e-10		
2fcfA	103	2.48e-10	b.36.1.1	133267
2v90A	96	2.49e-10		
1wf7A	103	2.75e-10	b.36.1.1	114577
2ozfA	92	3.74e-10		
2gzvA	114	4.42e-10		
1ihjA	98	4.55e-10	b.36.1.1	62382
2q3gA	89	5.55e-10		
1x45A	98	6.72e-10	b.36.1.1	121679
2h2bA	107	7.15e-10		
2qkvA	96	7.16e-10		
1kwaA	88	8.42e-10	b.36.1.1	24772
1l6oA	95	8.67e-10	b.36.1.1	84534
2iwoA	120	1.11e-09		
2pktA	91	1.18e-09		
2ocsA	88	1.34e-09		
2f0aA	98	1.37e-09	b.36.1.1	132661
1v5lA	103	1.50e-09	b.36.1.1	108378
1qauA	112	1.55e-09	b.36.1.1	24779
2vphA	100	1.61e-09		
2uzcA	88	1.71e-09		
2q9vA	90	1.78e-09		
2h3lA	103	2.00e-09	b.36.1.1	136046
2reyA	100	2.30e-09		
2f5yA	91	2.45e-09	b.36.1.1	133015
2i04A	85	2.68e-09		
2pa1A	87	2.94e-09		
1q3oA	109	3.32e-09	b.36.1.1	95700
1mfgA	95	3.50e-09	b.36.1.1	79043
2egoA	96	5.81e-09		
1r6jA	82	1.67e-08	b.36.1.1	97151
3bpuA	88	1.93e-08		
1fc6A	388	2.59e-08	b.36.1.3,c.14.1.2	64738,64739
1nf3C	128	1.60e-07	b.36.1.1	85596
2rczA	81	4.60e-07		
2eaqA	90	4.87e-07		
2z9iA	324	0.000273		
1y8tA	324	0.000904	b.36.1.4,b.47.1.1	122763,122764
2p3wA	112	0.001292		
1lcyA	325	0.002719	b.36.1.4,b.47.1.1	73834,73835
1te0A	318	0.003560	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.009170	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.06663	b.55.1.1	126599
1j7xA	302	0.2255	c.14.1.2	66425
1k32A	1045	0.5927	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1ha1	184	1.708		
2i6vA	87	9.554		
1l3kA	196	11.73	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	13.13	d.58.7.1,d.58.7.1	39183,39184
2p1zA	180	17.21		
2rgqA	144	34.55		
1vs0A	310	36.40		
1vchA	175	43.57	c.61.1.1	119980
2qsfX	171	44.70		
2ps1A	226	50.20		
2hs5A	239	53.84		
3c7jA	237	54.32		
1eonA	245	60.53	c.52.1.2	33238
1w30A	201	67.94	c.61.1.1	114118
3c2cA	112	69.11	a.3.1.1	15885
2ywkA	95	71.92		
1g2qA	187	73.00	c.61.1.1	65117
1bplB	294	73.55	b.71.1.1	27716
2di3A	239	74.68		
2shpA	525	77.15	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1dqeA	137	80.41	a.39.2.1	17388