# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2he2A 102 4.63e-14 1tp5A 119 1.82e-13 b.36.1.1 119305 1be9A 119 2.89e-13 b.36.1.1 24774 2i1nA 102 3.45e-13 1qavA 90 3.51e-13 b.36.1.1 24777 2qg1A 92 3.81e-13 2jilA 97 4.06e-13 1g9oA 91 4.71e-13 b.36.1.1 60400 2ozfA 92 4.92e-13 1n7eA 97 5.80e-13 b.36.1.1 91691 2qt5A 200 5.89e-13 2iwnA 97 5.94e-13 2he4A 90 6.70e-13 2awxA 105 7.46e-13 2v90A 96 8.06e-13 2opgA 98 9.24e-13 2jikA 101 9.56e-13 2fneA 117 1.05e-12 b.36.1.1 133813 2qkvA 96 1.22e-12 1l6oA 95 1.78e-12 b.36.1.1 84534 2gzvA 114 1.81e-12 1ihjA 98 2.00e-12 b.36.1.1 62382 2fe5A 94 2.08e-12 b.36.1.1 133323 2fcfA 103 2.18e-12 b.36.1.1 133267 1qauA 112 2.56e-12 b.36.1.1 24779 2f0aA 98 3.58e-12 b.36.1.1 132661 2iwoA 120 4.88e-12 1kwaA 88 4.99e-12 b.36.1.1 24772 1x45A 98 5.00e-12 b.36.1.1 121679 2q3gA 89 6.13e-12 2ocsA 88 6.71e-12 2q9vA 90 7.10e-12 1wf7A 103 7.81e-12 b.36.1.1 114577 2h2bA 107 8.43e-12 2reyA 100 8.89e-12 2pktA 91 1.52e-11 1v5lA 103 1.55e-11 b.36.1.1 108378 2i04A 85 1.59e-11 2uzcA 88 1.60e-11 2vphA 100 1.87e-11 2f5yA 91 2.11e-11 b.36.1.1 133015 1q3oA 109 2.36e-11 b.36.1.1 95700 2h3lA 103 3.06e-11 b.36.1.1 136046 2pa1A 87 3.46e-11 2egoA 96 3.77e-11 3bpuA 88 7.32e-11 1mfgA 95 9.51e-11 b.36.1.1 79043 1r6jA 82 2.82e-10 b.36.1.1 97151 1fc6A 388 3.27e-10 b.36.1.3,c.14.1.2 64738,64739 1nf3C 128 4.17e-10 b.36.1.1 85596 2rczA 81 4.20e-09 2eaqA 90 8.19e-09 2z9iA 324 9.96e-05 2p3wA 112 0.000132 1lcyA 325 0.000500 b.36.1.4,b.47.1.1 73834,73835 1y8tA 324 0.001165 b.36.1.4,b.47.1.1 122763,122764 1k32A 1045 0.01822 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1te0A 318 0.02543 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 0.05212 b.36.1.4,b.47.1.1 105852,105853 1j7xA 302 0.6670 c.14.1.2 66425 2adzA 178 0.7675 b.55.1.1 126599 2i6vA 87 1.285 1vjnA 220 3.850 d.157.1.4 100825 1qqqA 264 3.871 d.117.1.1 40931 1evfA 264 5.473 d.117.1.1 40932 1f28A 297 7.353 d.117.1.1 59608 1hvyA 288 8.790 d.117.1.1 41049 2dkaA 544 9.187 2g8mA 264 9.802 2btuA 346 10.73 2p1zA 180 10.83 1bkpA 278 11.36 d.117.1.1 41029 1ha1 184 11.55 2g8oA 264 12.08 d.117.1.1 134779 1ow1A 195 12.12 b.131.1.3 93625 1ev5A 264 16.01 d.117.1.1 40935 1g2qA 187 16.31 c.61.1.1 65117 1ypvA 313 16.54 1w30A 201 18.36 c.61.1.1 114118 2ax4A 198 20.97 2rgqA 144 22.87 2akaB 299 27.50 c.37.1.8 126914 1vchA 175 28.60 c.61.1.1 119980 3b5mA 205 30.36 1dmgA 225 30.71 c.22.1.1 31036 1uldA 150 32.05 b.29.1.3 99545 1xv5A 401 36.75 1eonA 245 37.19 c.52.1.2 33238 2dt8A 280 44.31 2ptfA 233 49.39 1uanA 227 51.04 c.134.1.1 99135 1zrhA 274 52.80 1qksA 567 53.18 a.3.1.2,b.70.2.1 15951,27710 2j73A 103 54.54 2adcA 229 58.60 d.58.7.1,d.58.7.1 126582,126583 1nrvA 105 68.05 d.93.1.1 86126 1zyoA 191 72.94 1c9oA 66 73.00 b.40.4.5 25325 1n3jA 119 73.12 b.85.7.2 79963 2ps1A 226 74.73 1zsxA 347 78.22 1l3kA 196 78.77 d.58.7.1,d.58.7.1 73539,73540 3bs5A 106 79.83 2jfzA 255 82.12 1l1qA 186 83.20 c.61.1.1 77653 2r6vA 191 85.99 2jsnA 96 88.83 1tuoA 464 89.85