# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 1.28e-14 2qg1A 92 1.76e-14 1g9oA 91 2.50e-14 b.36.1.1 60400 2opgA 98 3.08e-14 1ihjA 98 3.21e-14 b.36.1.1 62382 1qavA 90 1.09e-13 b.36.1.1 24777 2gzvA 114 1.19e-13 2qt5A 200 1.26e-13 2i1nA 102 1.72e-13 1n7eA 97 1.74e-13 b.36.1.1 91691 1tp5A 119 1.84e-13 b.36.1.1 119305 1be9A 119 2.09e-13 b.36.1.1 24774 2he2A 102 2.56e-13 2qkvA 96 2.78e-13 1qauA 112 2.83e-13 b.36.1.1 24779 2fcfA 103 2.96e-13 b.36.1.1 133267 2he4A 90 5.69e-13 1kwaA 88 5.83e-13 b.36.1.1 24772 2q3gA 89 6.15e-13 2jilA 97 6.24e-13 2v90A 96 6.77e-13 2egoA 96 7.31e-13 2jikA 101 7.67e-13 2h2bA 107 7.73e-13 2fneA 117 8.26e-13 b.36.1.1 133813 2f5yA 91 8.80e-13 b.36.1.1 133015 2fe5A 94 9.80e-13 b.36.1.1 133323 2uzcA 88 1.09e-12 2ocsA 88 1.16e-12 1x45A 98 1.36e-12 b.36.1.1 121679 1mfgA 95 2.01e-12 b.36.1.1 79043 2iwnA 97 2.30e-12 2q9vA 90 2.56e-12 1l6oA 95 2.91e-12 b.36.1.1 84534 2pktA 91 4.08e-12 2awxA 105 4.23e-12 3bpuA 88 6.00e-12 2iwoA 120 7.25e-12 2reyA 100 8.56e-12 2h3lA 103 9.42e-12 b.36.1.1 136046 1q3oA 109 9.86e-12 b.36.1.1 95700 1nf3C 128 1.03e-11 b.36.1.1 85596 2pa1A 87 1.57e-11 1r6jA 82 1.60e-11 b.36.1.1 97151 2i04A 85 1.90e-11 2vphA 100 2.34e-11 1wf7A 103 2.63e-11 b.36.1.1 114577 2f0aA 98 6.36e-11 b.36.1.1 132661 2eaqA 90 2.84e-10 2rczA 81 7.29e-09 1v5lA 103 1.19e-08 b.36.1.1 108378 1fc6A 388 1.02e-07 b.36.1.3,c.14.1.2 64738,64739 1y8tA 324 1.39e-05 b.36.1.4,b.47.1.1 122763,122764 2z9iA 324 3.35e-05 2p3wA 112 6.98e-05 1te0A 318 0.000291 b.36.1.4,b.47.1.1 112400,112401 1lcyA 325 0.000700 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 0.001574 1k32A 1045 0.5354 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2jsnA 96 6.482 2vmhA 151 6.865 2bw3A 534 9.727 a.270.1.1,c.55.3.12 129317,129318 2bz1A 196 11.78 c.144.1.1 129532 1ha1 184 12.09 1i4uA 181 13.77 b.60.1.1 61732 2qyaA 124 14.25 2a14A 263 16.03 c.66.1.15 125972 1a62A 130 16.32 a.140.3.1,b.40.4.5 64708,64709 1bn7A 294 17.46 c.69.1.8 34677 2a7lA 136 17.47 d.20.1.1 126350 2i62A 265 18.77 1l3kA 196 19.43 d.58.7.1,d.58.7.1 73539,73540 2o38A 120 19.60 3bdiA 207 20.30 2g72A 289 21.29 c.66.1.15 134724 2e3jA 356 22.68 2h7aA 110 23.60 1q0rA 298 23.78 c.69.1.28 95508 2c5qA 240 24.83 1vs0A 310 25.60 2cdqA 510 27.38 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 1a62 130 27.62 2hzqA 174 29.70 1yqdA 366 29.90 2b4uA 335 33.11 2j3tD 219 33.26 1um0A 365 33.57 d.258.1.1 107942 1prtF 98 34.28 b.40.2.1 25140 1vkcA 158 35.48 d.108.1.1 113663 2qdfA 335 36.27 2btuA 346 38.04 2pt0A 340 38.24 2ap1A 327 39.48 c.55.1.10,c.55.1.10 127108,127109 2nnuA 205 39.90 b.91.1.1 138401 1vj0A 380 41.42 b.35.1.2,c.2.1.1 100786,100787 1sjyA 159 42.45 d.113.1.1 98900 1yexA 186 44.05 c.47.1.10 123021 2qsdA 187 47.98 2gqpA 236 48.37 d.122.1.1 135513 2r47A 157 49.07 1unnC 115 49.84 d.240.1.1 99680 1rowA 109 52.01 b.1.11.2 97676 1j1iA 296 52.37 c.69.1.10 83977 2qlcA 126 52.99 1luzA 88 55.05 b.40.4.5 74271 1rsyA 152 55.90 b.7.1.2 23192 2yysA 286 56.15 1rsy 152 56.35 2dstA 131 56.92 2ejeA 114 57.85 2qguA 211 59.20 1xk5A 204 59.79 1hnnA 282 60.40 c.66.1.15 65895 2gs8A 317 62.65 1dtoA 221 63.13 b.91.1.1 28405 1rypH 205 63.16 d.153.1.4 41876 1mtzA 293 64.11 c.69.1.7 79467 1zo0A 126 64.69 d.108.1.7 125416 1lngA 87 65.26 d.201.1.1 74045 2obfA 289 65.36 3d2lA 243 69.88 2ei9A 240 72.25 1cmxA 236 72.65 d.3.1.6 37130 2go9A 161 72.69 1u24A 337 74.78 c.45.1.4 112968 1mucA 373 75.38 c.1.11.2,d.54.1.1 29236,38880 1f8fA 371 76.99 b.35.1.2,c.2.1.1 83246,83247 2joeA 139 79.43 2pdoA 144 79.61 1yzbA 182 82.67 2oe3A 114 83.50 2fl4A 149 87.29 d.108.1.1 133706 2fomB 185 88.20 b.47.1.3 133884 1u3wA 374 89.26 b.35.1.2,c.2.1.1 113013,113014 1nu5A 370 89.69 c.1.11.2,d.54.1.1 92183,92184