Best Alignments for TR476

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2i13A	6.8295e-01	2i13A/TR476-2i13A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
1a1iA	2.3385e+00	1a1iA/TR476-1a1iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
2drpA	3.0142e+00	2drpA/TR476-2drpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1meyC	3.5724e+00	1meyC/TR476-1meyC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
1a1gA	3.6848e+00	1a1gA/TR476-1a1gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1g2fC	5.1750e+00	1g2fC/TR476-1g2fC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.12.1.1
2ctdA	5.5598e+00	2ctdA/TR476-2ctdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1llmC	5.6556e+00	1llmC/TR476-1llmC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1
1lv3A	6.1325e+00	1lv3A/TR476-1lv3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
1aayA	6.2583e+00	1aayA/TR476-1aayA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1l8dA	6.6444e+00	1l8dA/TR476-1l8dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	h.4.12.1
1wjpA	7.5754e+00	1wjpA/TR476-1wjpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1zaaC	7.6815e+00	1zaaC/TR476-1zaaC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1ubdC	7.8148e+00	1ubdC/TR476-1ubdC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
1a1hA	9.8763e+00	1a1hA/TR476-1a1hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.37.1.1 g.37.1.1
1ryt	1.0249e+01	1ryt/TR476-1ryt-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rmdA	1.1202e+01	1rmdA/TR476-1rmdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.37.1.1 g.44.1.1
1tf3A	1.1340e+01	1tf3A/TR476-1tf3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ctuA	1.1426e+01	2ctuA/TR476-2ctuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yc5A	1.2107e+01	1yc5A/TR476-1yc5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.31.1.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001