# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.422 k.12.1.1 136964 1c3cA 429 4.256 a.127.1.1 19425 2ctdA 96 8.048 g.37.1.1,g.37.1.1 130792,130793 2hjhA 354 12.10 1ma3A 253 13.25 c.31.1.5 78883 1lv3A 68 13.86 g.39.1.9 78231 1ocvA 125 14.00 d.17.4.3 86810 1yc5A 246 14.89 c.31.1.5 122910 1e4uA 78 15.41 g.44.1.1 59231 1ffkW 73 17.33 g.41.8.1 45315 1m3vA 122 19.47 g.39.1.3,g.39.1.3 84794,84795 1jj2Y 73 19.74 g.41.8.1 63110 1ryt 190 21.71 1rmdA 116 25.55 g.37.1.1,g.44.1.1 45025,45322 1vqoZ 83 27.53 g.41.8.1 120387 1a1iA 90 28.07 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1jkzA 46 28.55 g.3.7.5 66820 2gx9A 129 29.44 d.299.1.1 135828 2b4yA 271 30.20 c.31.1.5 127868 2ausB 60 30.79 2c1cA 312 31.21 c.56.5.1 129630 1tq6A 413 32.75 c.37.1.8 107202 1lkoA 191 35.53 a.25.1.1,g.41.5.1 78063,78064 1l8dA 112 36.43 h.4.12.1 73687 1up6A 416 37.72 c.2.1.5,d.162.1.2 107976,107977 1s72Z 73 38.35 g.41.8.1 105345 1we9A 64 38.55 g.50.1.2 114549 2z61A 370 38.58 2qgpA 112 39.51 2rfkB 53 40.21 2drpA 66 42.67 g.37.1.1,g.37.1.1 45026,45027 1hnnA 282 44.44 c.66.1.15 65895 1g2fC 90 45.80 k.12.1.1 60222 1wiiA 85 45.84 g.41.3.4 114673 1meyC 87 47.80 k.12.1.1 46430 2apoB 60 49.14 g.41.16.1 127135 1iazA 179 50.75 b.97.1.1 62131 1b71A 191 52.17 a.25.1.1,g.41.5.1 16647,45246 1uw4A 91 54.54 d.58.7.4 100071 1q1aA 289 55.62 c.31.1.5 95561 2eloA 37 57.27 2rhkA 140 57.30 2gagD 99 57.46 1yf3A 259 58.13 c.66.1.28 123046 2fckA 181 59.67 d.108.1.1 133272 1j8fA 323 61.21 c.31.1.5 62738 1wjvA 79 62.62 g.37.1.2,g.37.1.2 114713,114714 1oksA 56 64.57 a.8.5.1 93271 2pmzP 48 64.82 2dulA 378 65.22 2a14A 263 65.88 c.66.1.15 125972 2ctuA 73 66.28 2j015 60 66.80 2pfmA 444 67.47 2f6kA 307 69.29 c.1.9.15 133047 1aayA 90 69.34 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1rmd 116 70.58 1a1gA 90 71.96 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1z6uA 150 74.26 1up7A 417 74.55 c.2.1.5,d.162.1.2 113374,113375 2cklB 165 77.13 2rk5A 87 77.27 2gliA 160 79.05 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1uu1A 335 79.36 c.67.1.1 99993 2eoyA 46 79.65 3cxkA 164 81.44 1oh0A 131 81.92 d.17.4.3 87004 1jr5A 90 83.37 a.150.1.1 67113 2j6aA 141 84.34 1srkA 35 84.51 g.37.1.1 105966 1m2kA 249 84.87 c.31.1.5 84754 1zaaC 87 87.17 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1wz7A 111 88.03 d.330.1.1 121480 1wjpA 107 88.89 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1twfI 122 89.41 g.41.3.1,g.41.3.1 112733,112734