# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 1.106 k.12.1.1 136964 1c3cA 429 4.896 a.127.1.1 19425 1ma3A 253 5.533 c.31.1.5 78883 2ctdA 96 7.798 g.37.1.1,g.37.1.1 130792,130793 1lv3A 68 9.811 g.39.1.9 78231 1a1iA 90 10.97 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2hjhA 354 11.53 1yc5A 246 14.16 c.31.1.5 122910 1ocvA 125 16.10 d.17.4.3 86810 1rmdA 116 16.18 g.37.1.1,g.44.1.1 45025,45322 1jj2Y 73 16.42 g.41.8.1 63110 1meyC 87 16.77 k.12.1.1 46430 2gx9A 129 17.23 d.299.1.1 135828 1ffkW 73 17.83 g.41.8.1 45315 1g2fC 90 18.31 k.12.1.1 60222 1vqoZ 83 19.63 g.41.8.1 120387 2ausB 60 21.72 1we9A 64 21.85 g.50.1.2 114549 2drpA 66 23.53 g.37.1.1,g.37.1.1 45026,45027 1m3vA 122 23.95 g.39.1.3,g.39.1.3 84794,84795 2z61A 370 25.21 1l8dA 112 25.37 h.4.12.1 73687 2rhkA 140 25.46 1aayA 90 25.91 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1wiiA 85 27.76 g.41.3.4 114673 2eloA 37 31.07 1e4uA 78 31.56 g.44.1.1 59231 1jkzA 46 31.86 g.3.7.5 66820 1a1gA 90 31.92 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1hnnA 282 32.17 c.66.1.15 65895 1wjpA 107 33.20 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1s72Z 73 34.45 g.41.8.1 105345 1zaaC 87 34.94 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2a14A 263 37.62 c.66.1.15 125972 1uw4A 91 37.82 d.58.7.4 100071 2rfkB 53 38.09 1q1aA 289 38.14 c.31.1.5 95561 2qgpA 112 39.06 1ryt 190 39.16 1iazA 179 40.47 b.97.1.1 62131 2cklB 165 41.09 1rmd 116 44.49 2c1cA 312 46.84 c.56.5.1 129630 2apoB 60 47.30 g.41.16.1 127135 1wjvA 79 47.48 g.37.1.2,g.37.1.2 114713,114714 2ctuA 73 47.86 1up6A 416 48.63 c.2.1.5,d.162.1.2 107976,107977 2b4yA 271 50.31 c.31.1.5 127868 1a1hA 90 50.79 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1jr5A 90 52.51 a.150.1.1 67113 2pmzP 48 52.83 1z6uA 150 53.17 2qmlA 198 53.71 1llmC 88 54.30 g.37.1.1,g.37.1.1 91059,91060 1buqA 125 54.89 d.17.4.3 38111 2gagD 99 55.17 2fckA 181 55.51 d.108.1.1 133272 1j8fA 323 58.18 c.31.1.5 62738 1lkoA 191 59.01 a.25.1.1,g.41.5.1 78063,78064 1up7A 417 61.58 c.2.1.5,d.162.1.2 113374,113375 2rk5A 87 62.14 1srkA 35 64.26 g.37.1.1 105966 2eoyA 46 67.85 2gliA 160 68.94 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2j015 60 71.04 1tq6A 413 74.56 c.37.1.8 107202 2j6aA 141 74.99 2fmpA 335 75.16 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 2dulA 378 76.45 1twfI 122 78.46 g.41.3.1,g.41.3.1 112733,112734 2qjoA 341 79.70 2h7cA 542 83.99 c.69.1.1 136207 2hnhA 910 84.67 1b71A 191 85.68 a.25.1.1,g.41.5.1 16647,45246 1qxfA 66 86.82 g.41.8.4 96527 1y07A 128 88.25