# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ma3A 253 0.4764 c.31.1.5 78883 2i13A 190 0.6689 k.12.1.1 136964 1yc5A 246 1.162 c.31.1.5 122910 2ctdA 96 1.803 g.37.1.1,g.37.1.1 130792,130793 1e4uA 78 1.953 g.44.1.1 59231 1we9A 64 2.449 g.50.1.2 114549 1q1aA 289 3.090 c.31.1.5 95561 1wjvA 79 3.213 g.37.1.2,g.37.1.2 114713,114714 1c3cA 429 4.364 a.127.1.1 19425 2hjhA 354 4.926 2drpA 66 5.473 g.37.1.1,g.37.1.1 45026,45027 1rmdA 116 5.803 g.37.1.1,g.44.1.1 45025,45322 1lv3A 68 6.012 g.39.1.9 78231 1a1iA 90 6.591 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1meyC 87 7.009 k.12.1.1 46430 1rmd 116 8.988 1g2fC 90 9.723 k.12.1.1 60222 1j8fA 323 10.88 c.31.1.5 62738 1ffkW 73 12.84 g.41.8.1 45315 1m3vA 122 12.94 g.39.1.3,g.39.1.3 84794,84795 1aayA 90 13.03 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1l8dA 112 13.14 h.4.12.1 73687 2qgpA 112 13.46 1wjpA 107 14.63 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1zaaC 87 15.13 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1vd4A 62 16.20 g.41.3.1 113613 1wiiA 85 16.90 g.41.3.4 114673 2ausB 60 19.27 1jj2Y 73 19.48 g.41.8.1 63110 1a1gA 90 19.52 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1uw4A 91 21.34 d.58.7.4 100071 2eloA 37 21.47 1jkzA 46 21.75 g.3.7.5 66820 1llmC 88 23.17 g.37.1.1,g.37.1.1 91059,91060 2eoyA 46 23.34 2b4yA 271 24.01 c.31.1.5 127868 1vqoZ 83 24.38 g.41.8.1 120387 1a1hA 90 25.25 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2ctuA 73 25.98 2a14A 263 27.68 c.66.1.15 125972 1alvA 173 28.37 a.39.1.8 17370 1ryt 190 30.20 2apoB 60 30.64 g.41.16.1 127135 1ur6B 52 31.33 g.44.1.1 99812 2gagD 99 31.37 2bl0C 142 31.38 1g47A 77 32.16 g.39.1.3,g.39.1.3 45147,45148 1ocvA 125 33.61 d.17.4.3 86810 1s72Z 73 34.85 g.41.8.1 105345 1buqA 125 34.86 d.17.4.3 38111 1hnnA 282 34.87 c.66.1.15 65895 2cklB 165 35.54 1a7iA 81 36.74 g.39.1.3,g.39.1.3 45143,45144 1z6uA 150 36.91 1ubdC 124 37.24 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1m2kA 249 37.95 c.31.1.5 84754 2rk5A 87 38.06 2d9kA 75 40.22 1twfI 122 43.04 g.41.3.1,g.41.3.1 112733,112734 2o1rA 81 44.63 2z0xA 158 44.82 2junA 101 44.87 1qxfA 66 45.04 g.41.8.4 96527 1tq6A 413 45.57 c.37.1.8 107202 1lkoA 191 46.05 a.25.1.1,g.41.5.1 78063,78064 2cklA 108 46.93 2pliA 91 48.18 6rxnA 45 48.92 g.41.5.1 45222 1oksA 56 49.31 a.8.5.1 93271 2fcrA 173 50.22 c.23.5.1 31151 2rfkB 53 52.40 1iroA 54 55.09 g.41.5.1 45223 2dulA 378 56.36 1vk6A 269 56.55 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1up6A 416 56.77 c.2.1.5,d.162.1.2 107976,107977 2hnhA 910 57.72 1dxgA 36 57.95 g.41.5.2 45247 1dx8A 70 58.32 g.41.5.1 45243 2hu9A 130 58.54 1ptqA 50 58.58 g.49.1.1 45349 2j6aA 141 58.86 1x31D 99 59.39 2occF 98 62.81 g.41.5.3 45256 2dmiA 115 62.89 1wfeA 86 63.12 g.80.1.1 114579 3cxkA 164 63.49 1jr5A 90 63.49 a.150.1.1 67113 1ptq 50 63.66 1iciA 256 63.90 c.31.1.5 62266 1np8A 159 64.02 a.39.1.8 92022 1b2jA 54 64.65 g.41.5.1 45231 1b13A 54 64.74 g.41.5.1 45227 2dsxA 52 65.26 g.41.5.1 131699 1qjtA 99 66.60 a.39.1.6 17335 2pvxA 54 68.10 2c1cA 312 68.13 c.56.5.1 129630 2pveA 54 68.69 1b71A 191 69.29 a.25.1.1,g.41.5.1 16647,45246 1srkA 35 69.79 g.37.1.1 105966 1fuoA 467 70.13 a.127.1.1 19411 2obhA 143 70.77 1pioA 257 72.65 e.3.1.1 42719 1k81A 36 74.57 g.59.1.1 72136 3bfxA 296 74.89 1y0vH 146 77.35 1rb9A 52 78.03 g.41.5.1 45214 2qmlA 198 79.33 1ncx 162 79.35 2aaoA 166 79.96 2hq4A 161 80.49 2vpbA 65 81.61 1ryqA 69 82.27 g.41.9.3 105126 2ct0A 74 82.51 2b9dA 52 84.00 1l1dA 152 84.79 b.88.1.3 73452 3cngA 189 86.01 2pfmA 444 86.80 1yuiA 54 89.00 g.37.1.1 45073 2fiyA 309 89.38 e.59.1.1 133540