# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 1.556 k.12.1.1 136964 1c3cA 429 4.759 a.127.1.1 19425 1ma3A 253 6.068 c.31.1.5 78883 1yc5A 246 9.542 c.31.1.5 122910 1ocvA 125 12.02 d.17.4.3 86810 2ctdA 96 12.21 g.37.1.1,g.37.1.1 130792,130793 1ryt 190 12.25 1jj2Y 73 12.91 g.41.8.1 63110 1vqoZ 83 14.77 g.41.8.1 120387 1ffkW 73 17.04 g.41.8.1 45315 1lv3A 68 19.15 g.39.1.9 78231 1lkoA 191 19.63 a.25.1.1,g.41.5.1 78063,78064 2z61A 370 21.36 2b4yA 271 22.32 c.31.1.5 127868 2drpA 66 23.13 g.37.1.1,g.37.1.1 45026,45027 1meyC 87 23.41 k.12.1.1 46430 1e4uA 78 23.56 g.44.1.1 59231 2hjhA 354 24.23 1a1iA 90 27.09 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1l8dA 112 27.31 h.4.12.1 73687 2rfkB 53 27.77 2ausB 60 27.84 1s72Z 73 30.53 g.41.8.1 105345 2gx9A 129 30.62 d.299.1.1 135828 1uw4A 91 31.69 d.58.7.4 100071 1m3vA 122 31.98 g.39.1.3,g.39.1.3 84794,84795 1g2fC 90 33.74 k.12.1.1 60222 1b71A 191 33.94 a.25.1.1,g.41.5.1 16647,45246 1wiiA 85 36.45 g.41.3.4 114673 1hnnA 282 37.96 c.66.1.15 65895 2a14A 263 42.41 c.66.1.15 125972 1up6A 416 43.52 c.2.1.5,d.162.1.2 107976,107977 2dulA 378 45.59 2qgpA 112 45.87 1wjvA 79 47.01 g.37.1.2,g.37.1.2 114713,114714 2cklB 165 47.76 1rmdA 116 48.44 g.37.1.1,g.44.1.1 45025,45322 1aayA 90 48.82 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1zaaC 87 49.23 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2apoB 60 49.32 g.41.16.1 127135 2rhkA 140 50.59 1up7A 417 51.02 c.2.1.5,d.162.1.2 113374,113375 1yf3A 259 51.94 c.66.1.28 123046 1jkzA 46 55.20 g.3.7.5 66820 1m2kA 249 57.52 c.31.1.5 84754 1wz7A 111 58.55 d.330.1.1 121480 1tq6A 413 58.76 c.37.1.8 107202 2eoyA 46 58.80 1srkA 35 59.67 g.37.1.1 105966 1a1gA 90 59.84 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1iazA 179 59.89 b.97.1.1 62131 1k81A 36 60.52 g.59.1.1 72136 1we9A 64 64.83 g.50.1.2 114549 2eloA 37 65.95 2f6kA 307 66.45 c.1.9.15 133047 1q1aA 289 67.57 c.31.1.5 95561 1ubdC 124 68.48 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1jr5A 90 70.11 a.150.1.1 67113 1s6yA 450 72.42 c.2.1.5,d.162.1.2 105314,105315 1z5zA 271 72.73 c.37.1.19 124499 2rk5A 87 73.48 1uu1A 335 77.70 c.67.1.1 99993 1wjpA 107 77.79 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1rmd 116 78.98 1z6uA 150 79.69 1a1hA 90 82.92 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2gliA 160 87.86 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2gagD 99 89.41