# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i13A	190	4.337	k.12.1.1	136964
1c3cA	429	6.825	a.127.1.1	19425
1ma3A	253	13.15	c.31.1.5	78883
1yc5A	246	14.82	c.31.1.5	122910
2z61A	370	19.43		
1jj2Y	73	20.44	g.41.8.1	63110
1ryt	190	20.83		
2gx9A	129	21.23	d.299.1.1	135828
2ctdA	96	21.64	g.37.1.1,g.37.1.1	130792,130793
1ffkW	73	23.75	g.41.8.1	45315
1vqoZ	83	25.44	g.41.8.1	120387
2hjhA	354	25.62		
1lv3A	68	26.23	g.39.1.9	78231
1m3vA	122	28.29	g.39.1.3,g.39.1.3	84794,84795
1e4uA	78	31.10	g.44.1.1	59231
1ocvA	125	32.28	d.17.4.3	86810
2b4yA	271	32.61	c.31.1.5	127868
1l8dA	112	32.63	h.4.12.1	73687
1lkoA	191	33.35	a.25.1.1,g.41.5.1	78063,78064
1uw4A	91	33.47	d.58.7.4	100071
2rhkA	140	35.13		
1hnnA	282	37.54	c.66.1.15	65895
2rfkB	53	41.20		
2qgpA	112	42.01		
1s72Z	73	45.53	g.41.8.1	105345
2ausB	60	45.61		
1yf3A	259	51.20	c.66.1.28	123046
2dulA	378	51.37		
2apoB	60	53.09	g.41.16.1	127135
1b71A	191	53.35	a.25.1.1,g.41.5.1	16647,45246
1tq6A	413	55.55	c.37.1.8	107202
2f6kA	307	58.28	c.1.9.15	133047
2a14A	263	59.18	c.66.1.15	125972
1up6A	416	60.37	c.2.1.5,d.162.1.2	107976,107977
1meyC	87	60.55	k.12.1.1	46430
1wiiA	85	63.57	g.41.3.4	114673
2drpA	66	63.81	g.37.1.1,g.37.1.1	45026,45027
1a1iA	90	66.61	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2eloA	37	67.86		
2rk5A	87	71.44		
1up7A	417	71.81	c.2.1.5,d.162.1.2	113374,113375
1jkzA	46	72.09	g.3.7.5	66820
2cklB	165	75.39		
1rmdA	116	76.42	g.37.1.1,g.44.1.1	45025,45322
1uu1A	335	78.45	c.67.1.1	99993
1srkA	35	84.92	g.37.1.1	105966
1s6yA	450	85.08	c.2.1.5,d.162.1.2	105314,105315
2c1cA	312	86.53	c.56.5.1	129630
2gagD	99	88.21		
1wz7A	111	89.66	d.330.1.1	121480