# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i13A	190	3.262	k.12.1.1	136964
1c3cA	429	6.895	a.127.1.1	19425
1ma3A	253	12.23	c.31.1.5	78883
2ctdA	96	17.28	g.37.1.1,g.37.1.1	130792,130793
1yc5A	246	17.64	c.31.1.5	122910
2gx9A	129	20.57	d.299.1.1	135828
1jj2Y	73	21.06	g.41.8.1	63110
1ryt	190	21.11		
1ffkW	73	21.98	g.41.8.1	45315
1ocvA	125	22.60	d.17.4.3	86810
1vqoZ	83	25.75	g.41.8.1	120387
2z61A	370	26.33		
1uw4A	91	26.39	d.58.7.4	100071
1lv3A	68	27.37	g.39.1.9	78231
2rhkA	140	29.11		
2b4yA	271	30.22	c.31.1.5	127868
1e4uA	78	31.43	g.44.1.1	59231
2hjhA	354	32.27		
1m3vA	122	32.81	g.39.1.3,g.39.1.3	84794,84795
1l8dA	112	33.20	h.4.12.1	73687
1lkoA	191	34.80	a.25.1.1,g.41.5.1	78063,78064
1yf3A	259	39.18	c.66.1.28	123046
1a1iA	90	43.77	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
2qgpA	112	43.96		
1up6A	416	44.35	c.2.1.5,d.162.1.2	107976,107977
2dulA	378	45.56		
1s72Z	73	45.97	g.41.8.1	105345
2rfkB	53	46.50		
1hnnA	282	46.86	c.66.1.15	65895
2drpA	66	48.98	g.37.1.1,g.37.1.1	45026,45027
2ausB	60	50.44		
1tq6A	413	52.65	c.37.1.8	107202
1rmdA	116	53.97	g.37.1.1,g.44.1.1	45025,45322
2a14A	263	53.99	c.66.1.15	125972
1meyC	87	55.38	k.12.1.1	46430
1b71A	191	55.57	a.25.1.1,g.41.5.1	16647,45246
2f6kA	307	56.52	c.1.9.15	133047
1wiiA	85	61.71	g.41.3.4	114673
1up7A	417	62.58	c.2.1.5,d.162.1.2	113374,113375
2cklB	165	63.64		
1wz7A	111	66.20	d.330.1.1	121480
2eloA	37	67.97		
2apoB	60	69.79	g.41.16.1	127135
1srkA	35	73.34	g.37.1.1	105966
1jkzA	46	74.13	g.3.7.5	66820
1g2fC	90	74.33	k.12.1.1	60222
1uu1A	335	79.28	c.67.1.1	99993
1aayA	90	80.67	g.37.1.1,g.37.1.1,g.37.1.1	45001,45002,45003
1k81A	36	82.70	g.59.1.1	72136
2rk5A	87	89.47		
1we9A	64	89.61	g.50.1.2	114549