# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i13A	190	5.054	k.12.1.1	136964
1ma3A	253	8.602	c.31.1.5	78883
1yc5A	246	16.65	c.31.1.5	122910
1meyC	87	22.42	k.12.1.1	46430
1c3cA	429	27.78	a.127.1.1	19425
1lv3A	68	29.23	g.39.1.9	78231
2drpA	66	32.34	g.37.1.1,g.37.1.1	45026,45027
1a1iA	90	32.75	g.37.1.1,g.37.1.1,g.37.1.1	44998,44999,45000
1m2kA	249	35.05	c.31.1.5	84754
1ryt	190	37.75		
1rmdA	116	37.94	g.37.1.1,g.44.1.1	45025,45322
1g2fC	90	40.41	k.12.1.1	60222
1a1gA	90	42.14	g.37.1.1,g.37.1.1,g.37.1.1	45010,45011,45012
1aayA	90	43.23	g.37.1.1,g.37.1.1,g.37.1.1	45001,45002,45003
2cklB	165	45.47		
2ctdA	96	48.05	g.37.1.1,g.37.1.1	130792,130793
2ausB	60	48.41		
1lkoA	191	48.92	a.25.1.1,g.41.5.1	78063,78064
2apoB	60	50.76	g.41.16.1	127135
1we9A	64	52.21	g.50.1.2	114549
1ocvA	125	52.97	d.17.4.3	86810
2qgpA	112	55.50		
1a1hA	90	57.11	g.37.1.1,g.37.1.1,g.37.1.1	45004,45005,45006
1wiiA	85	57.49	g.41.3.4	114673
1zaaC	87	57.61	g.37.1.1,g.37.1.1,g.37.1.1	45013,45014,45015
1jj2Y	73	58.29	g.41.8.1	63110
1llmC	88	63.93	g.37.1.1,g.37.1.1	91059,91060
1wjpA	107	65.33	g.37.1.1,g.37.1.1,g.37.1.1	114705,114706,114707
1vqoZ	83	66.59	g.41.8.1	120387
1q1aA	289	69.53	c.31.1.5	95561
1fzyA	149	72.25	d.20.1.1	65072
2eloA	37	76.73		
2rfkB	53	76.97		
1e4uA	78	82.52	g.44.1.1	59231
2b4yA	271	83.03	c.31.1.5	127868
3cbuA	214	87.13		
2hjhA	354	88.87		
1wjvA	79	88.92	g.37.1.2,g.37.1.2	114713,114714