# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.405 k.12.1.1 136964 1c3cA 429 15.42 a.127.1.1 19425 1a1iA 90 16.19 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1meyC 87 17.27 k.12.1.1 46430 1g2fC 90 21.24 k.12.1.1 60222 1lv3A 68 21.94 g.39.1.9 78231 2ctdA 96 22.72 g.37.1.1,g.37.1.1 130792,130793 1rmdA 116 22.86 g.37.1.1,g.44.1.1 45025,45322 2drpA 66 26.65 g.37.1.1,g.37.1.1 45026,45027 1yc5A 246 26.66 c.31.1.5 122910 2fcrA 173 26.66 c.23.5.1 31151 1ma3A 253 27.88 c.31.1.5 78883 1aayA 90 28.84 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1a1gA 90 29.86 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1m3vA 122 30.73 g.39.1.3,g.39.1.3 84794,84795 1jj2Y 73 31.00 g.41.8.1 63110 1llmC 88 32.01 g.37.1.1,g.37.1.1 91059,91060 2ausB 60 32.97 2hjhA 354 33.85 1zaaC 87 34.00 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ffkW 73 34.79 g.41.8.1 45315 1vqoZ 83 36.97 g.41.8.1 120387 1l8dA 112 40.28 h.4.12.1 73687 1ocvA 125 42.42 d.17.4.3 86810 2rfkB 53 43.61 1wjvA 79 43.94 g.37.1.2,g.37.1.2 114713,114714 1e4uA 78 44.78 g.44.1.1 59231 1a1hA 90 46.23 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1ryt 190 46.37 1wiiA 85 47.56 g.41.3.4 114673 1tq6A 413 47.65 c.37.1.8 107202 2apoB 60 47.67 g.41.16.1 127135 1z6uA 150 49.54 1wjpA 107 49.74 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1uw4A 91 53.96 d.58.7.4 100071 1we9A 64 55.18 g.50.1.2 114549 2b4yA 271 57.40 c.31.1.5 127868 1s72Z 73 60.05 g.41.8.1 105345 2qgpA 112 60.21 1srkA 35 61.86 g.37.1.1 105966 2gx9A 129 61.91 d.299.1.1 135828 2z61A 370 64.41 2cklB 165 64.71 1jkzA 46 66.25 g.3.7.5 66820 1lkoA 191 66.86 a.25.1.1,g.41.5.1 78063,78064 2pmzP 48 70.69 1hnnA 282 70.92 c.66.1.15 65895 1m2kA 249 73.33 c.31.1.5 84754 2eoyA 46 76.79 1up6A 416 77.75 c.2.1.5,d.162.1.2 107976,107977 2c1cA 312 77.81 c.56.5.1 129630 1oksA 56 79.79 a.8.5.1 93271 1ubdC 124 81.51 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 1b71A 191 83.33 a.25.1.1,g.41.5.1 16647,45246 2eloA 37 84.73 1up7A 417 85.15 c.2.1.5,d.162.1.2 113374,113375 2j7jA 85 89.64 1rmd 116 89.72