# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 0.2164 k.12.1.1 136964 2fcrA 173 0.6964 c.23.5.1 31151 1up6A 416 0.9074 c.2.1.5,d.162.1.2 107976,107977 2ctdA 96 1.207 g.37.1.1,g.37.1.1 130792,130793 1rmdA 116 2.053 g.37.1.1,g.44.1.1 45025,45322 2qgpA 112 2.252 1yf3A 259 2.524 c.66.1.28 123046 1c3cA 429 4.744 a.127.1.1 19425 1l8dA 112 6.099 h.4.12.1 73687 1z6uA 150 6.134 1rmd 116 6.590 1meyC 87 6.928 k.12.1.1 46430 1uw4A 91 8.342 d.58.7.4 100071 1lv3A 68 8.958 g.39.1.9 78231 1we9A 64 9.752 g.50.1.2 114549 2hnhA 910 10.64 1g2fC 90 10.68 k.12.1.1 60222 1e4uA 78 10.86 g.44.1.1 59231 2drpA 66 12.29 g.37.1.1,g.37.1.1 45026,45027 2rhkA 140 13.91 1jihA 531 14.73 d.240.1.1,e.8.1.7 90374,90375 1q0sA 259 14.84 c.66.1.28 95509 1mjgM 729 15.08 e.26.1.3 79204 1aayA 90 15.81 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1a1gA 90 17.15 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1ocvA 125 18.48 d.17.4.3 86810 1ibrB 462 19.13 a.118.1.1 19120 1zaaC 87 19.42 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ffkW 73 20.54 g.41.8.1 45315 1zsoA 164 20.58 b.166.1.1 125610 2cklB 165 21.16 2e27H 126 21.20 2gx9A 129 21.65 d.299.1.1 135828 1qj4A 257 22.57 c.69.1.20 34796 2cy8A 453 22.59 2ausB 60 23.00 1llmC 88 23.60 g.37.1.1,g.37.1.1 91059,91060 1ujnA 348 24.63 e.22.1.1 99460 2qgqA 304 25.68 1a1hA 90 27.30 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1fn9A 365 27.55 d.196.1.1 59894 1auwA 468 27.74 a.127.1.1 19416 1jj2Y 73 27.87 g.41.8.1 63110 1wjvA 79 29.06 g.37.1.2,g.37.1.2 114713,114714 1vqoZ 83 32.65 g.41.8.1 120387 1up7A 417 33.64 c.2.1.5,d.162.1.2 113374,113375 1hdhA 536 34.60 c.76.1.2 65805 1gz6A 319 34.69 c.2.1.2 76410 1thgA 544 35.13 c.69.1.17 34763 2pajA 492 35.63 2dulA 378 35.93 1deuA 277 37.18 d.3.1.1 37085 1a1iA 90 37.46 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2hxvA 360 38.25 c.71.1.2,c.97.1.2 136859,136860 1wjpA 107 39.43 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2pggA 774 39.78 1wiiA 85 39.88 g.41.3.4 114673 2apoB 60 40.74 g.41.16.1 127135 2j13A 247 41.81 c.6.2.3 137934 2pusA 852 42.58 2bl0C 142 44.74 2fqhA 109 45.48 1aj5A 173 45.99 a.39.1.8 17367 2hcyA 347 46.78 1ef1A 294 47.01 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1b2oA 54 48.04 g.41.5.1 45233 1oksA 56 48.87 a.8.5.1 93271 1ey4A 149 50.16 b.40.1.1 24815 2eloA 37 50.92 1xvjA 109 50.97 2pmzP 48 51.80 1g67A 225 53.03 c.1.3.1 60311 1x3lA 440 53.31 1srkA 35 53.79 g.37.1.1 105966 2c1vA 338 54.85 2rfkB 53 55.84 1f94A 63 56.44 g.7.1.1 44435 1s72Z 73 56.71 g.41.8.1 105345 1bllE 488 57.55 c.50.1.1,c.56.5.3 33170,33833 1gph1 465 58.07 2rk5A 87 58.29 2rmcA 182 60.04 b.62.1.1 27491 1ma3A 253 60.05 c.31.1.5 78883 2gkmA 136 61.04 1x0rA 249 63.47 c.47.1.10 121562 1k7wA 468 63.70 a.127.1.1 72130 1ru8A 232 63.80 c.26.2.1 97849 2o01F 154 63.82 1vd4A 62 64.58 g.41.3.1 113613 2j6aA 141 65.46 1jkzA 46 65.76 g.3.7.5 66820 1lpjA 133 66.84 b.60.1.2 78123 1m3vA 122 67.63 g.39.1.3,g.39.1.3 84794,84795 1ubdC 124 68.63 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 2gliA 160 70.40 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1rroA 108 71.21 a.39.1.4 17195 2cdcA 366 74.13 1y9aA 360 74.78 2eoyA 46 75.45 1y8qB 640 76.31 1bgvA 449 76.43 c.2.1.7,c.58.1.1 30217,33865 1hrdA 449 77.65 c.2.1.7,c.58.1.1 30219,33867 2j7jA 85 77.69 1v33A 366 77.92 d.264.1.1 100278 1alvA 173 79.58 a.39.1.8 17370 3c5mA 396 80.12 1yo6A 250 81.31 c.2.1.2 123769 2c5kT 95 83.13 2mtaC 147 85.20 a.3.1.1 15908 1ac5 483 85.57 1eb7A 323 85.75 a.3.1.5,a.3.1.5 59404,59405 1jr5A 90 86.96 a.150.1.1 67113 2cfeA 162 87.63 b.62.1.1 130375 1yozA 116 89.28 a.253.1.1 123796 2rh1A 500 89.37 1n0xH 230 89.40 b.1.1.1,b.1.1.2 91528,91529 2ctuA 73 89.71 1h2wA 710 89.77 b.69.7.1,c.69.1.4 76596,76597