# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.337 k.12.1.1 136964 1c3cA 429 13.66 a.127.1.1 19425 1meyC 87 16.16 k.12.1.1 46430 1ma3A 253 17.76 c.31.1.5 78883 1lv3A 68 18.11 g.39.1.9 78231 1a1iA 90 18.54 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1rmdA 116 19.22 g.37.1.1,g.44.1.1 45025,45322 2ctdA 96 19.34 g.37.1.1,g.37.1.1 130792,130793 1yc5A 246 20.65 c.31.1.5 122910 1g2fC 90 22.58 k.12.1.1 60222 1m3vA 122 24.44 g.39.1.3,g.39.1.3 84794,84795 2fcrA 173 25.98 c.23.5.1 31151 2drpA 66 26.52 g.37.1.1,g.37.1.1 45026,45027 1ffkW 73 28.65 g.41.8.1 45315 1a1gA 90 30.27 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1l8dA 112 30.72 h.4.12.1 73687 1aayA 90 31.43 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2gx9A 129 31.57 d.299.1.1 135828 1jj2Y 73 32.07 g.41.8.1 63110 1e4uA 78 33.97 g.44.1.1 59231 1llmC 88 34.26 g.37.1.1,g.37.1.1 91059,91060 2hjhA 354 34.79 1zaaC 87 37.63 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1ocvA 125 38.41 d.17.4.3 86810 1vqoZ 83 38.81 g.41.8.1 120387 2ausB 60 39.24 1we9A 64 39.33 g.50.1.2 114549 1wjvA 79 42.34 g.37.1.2,g.37.1.2 114713,114714 2b4yA 271 43.03 c.31.1.5 127868 2rhkA 140 44.03 1z6uA 150 45.30 1a1hA 90 45.96 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2qgpA 112 48.05 2apoB 60 49.05 g.41.16.1 127135 1ryt 190 51.81 2rfkB 53 53.47 1wjpA 107 53.90 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1tq6A 413 54.32 c.37.1.8 107202 1m2kA 249 54.84 c.31.1.5 84754 1wiiA 85 55.88 g.41.3.4 114673 1s72Z 73 56.23 g.41.8.1 105345 2z61A 370 58.83 1uw4A 91 60.50 d.58.7.4 100071 1up6A 416 60.57 c.2.1.5,d.162.1.2 107976,107977 1srkA 35 61.04 g.37.1.1 105966 2pmzP 48 61.52 2cklB 165 63.70 1oksA 56 68.05 a.8.5.1 93271 1hnnA 282 69.68 c.66.1.15 65895 1yf3A 259 72.63 c.66.1.28 123046 2eloA 37 74.37 1lkoA 191 75.29 a.25.1.1,g.41.5.1 78063,78064 2eoyA 46 75.79 1jkzA 46 76.38 g.3.7.5 66820 2j7jA 85 77.71 1rmd 116 82.32 1up7A 417 87.69 c.2.1.5,d.162.1.2 113374,113375 2dmiA 115 88.86