# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 2.318 k.12.1.1 136964 1c3cA 429 9.99 a.127.1.1 19425 2ctdA 96 10.79 g.37.1.1,g.37.1.1 130792,130793 1ma3A 253 14.62 c.31.1.5 78883 1lv3A 68 15.60 g.39.1.9 78231 2qgpA 112 16.25 1ocvA 125 16.54 d.17.4.3 86810 2fcrA 173 18.55 c.23.5.1 31151 1rmdA 116 19.06 g.37.1.1,g.44.1.1 45025,45322 1a1iA 90 20.22 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2gx9A 129 20.63 d.299.1.1 135828 1m3vA 122 22.35 g.39.1.3,g.39.1.3 84794,84795 1e4uA 78 22.52 g.44.1.1 59231 1ffkW 73 22.77 g.41.8.1 45315 2rhkA 140 23.07 1we9A 64 23.61 g.50.1.2 114549 1jj2Y 73 23.70 g.41.8.1 63110 2drpA 66 25.86 g.37.1.1,g.37.1.1 45026,45027 2hjhA 354 26.81 1vqoZ 83 28.41 g.41.8.1 120387 1meyC 87 28.53 k.12.1.1 46430 1uw4A 91 30.45 d.58.7.4 100071 1ryt 190 33.83 1g2fC 90 33.86 k.12.1.1 60222 2ausB 60 33.87 1yc5A 246 34.55 c.31.1.5 122910 2b4yA 271 35.64 c.31.1.5 127868 1l8dA 112 37.84 h.4.12.1 73687 2cklB 165 40.56 2rfkB 53 42.02 2eloA 37 43.61 1aayA 90 45.69 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1hnnA 282 47.87 c.66.1.15 65895 1wiiA 85 48.52 g.41.3.4 114673 2z61A 370 48.70 1jkzA 46 50.20 g.3.7.5 66820 1s72Z 73 52.35 g.41.8.1 105345 1lkoA 191 52.61 a.25.1.1,g.41.5.1 78063,78064 1a1gA 90 55.50 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1wjvA 79 58.09 g.37.1.2,g.37.1.2 114713,114714 1rmd 116 59.43 1zaaC 87 60.09 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1q1aA 289 62.69 c.31.1.5 95561 1wjpA 107 63.62 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2apoB 60 67.84 g.41.16.1 127135 2pmzP 48 68.46 1buqA 125 68.49 d.17.4.3 38111 1pa4A 116 69.84 d.52.7.1 94409 1iazA 179 69.88 b.97.1.1 62131 2ctuA 73 71.25 2a14A 263 74.72 c.66.1.15 125972 1llmC 88 74.96 g.37.1.1,g.37.1.1 91059,91060 1tq6A 413 74.97 c.37.1.8 107202 1m2kA 249 75.28 c.31.1.5 84754 1yf3A 259 75.43 c.66.1.28 123046 1srkA 35 76.23 g.37.1.1 105966 1up6A 416 76.44 c.2.1.5,d.162.1.2 107976,107977 1a1hA 90 78.24 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2dulA 378 85.34 2j015 60 87.60 2gliA 160 88.08 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045