# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 1.632 k.12.1.1 136964 1ma3A 253 4.841 c.31.1.5 78883 2ctdA 96 8.535 g.37.1.1,g.37.1.1 130792,130793 1c3cA 429 8.822 a.127.1.1 19425 1ocvA 125 8.905 d.17.4.3 86810 1lv3A 68 9.561 g.39.1.9 78231 1yc5A 246 11.06 c.31.1.5 122910 1ffkW 73 16.18 g.41.8.1 45315 2hjhA 354 16.88 1meyC 87 17.03 k.12.1.1 46430 1ryt 190 17.75 1a1iA 90 18.22 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1e4uA 78 18.29 g.44.1.1 59231 1we9A 64 19.16 g.50.1.2 114549 1rmdA 116 20.68 g.37.1.1,g.44.1.1 45025,45322 2drpA 66 20.95 g.37.1.1,g.37.1.1 45026,45027 1m3vA 122 23.02 g.39.1.3,g.39.1.3 84794,84795 1jj2Y 73 24.17 g.41.8.1 63110 1vqoZ 83 26.84 g.41.8.1 120387 1wjvA 79 26.87 g.37.1.2,g.37.1.2 114713,114714 1aayA 90 27.31 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1l8dA 112 27.63 h.4.12.1 73687 2qgpA 112 29.26 1lkoA 191 29.62 a.25.1.1,g.41.5.1 78063,78064 2ausB 60 30.41 1g2fC 90 31.65 k.12.1.1 60222 1q1aA 289 31.91 c.31.1.5 95561 1buqA 125 32.84 d.17.4.3 38111 1zaaC 87 33.13 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2rhkA 140 35.03 1uw4A 91 35.55 d.58.7.4 100071 2gx9A 129 38.72 d.299.1.1 135828 2b4yA 271 38.86 c.31.1.5 127868 2rfkB 53 40.13 1wiiA 85 40.78 g.41.3.4 114673 2c1cA 312 42.96 c.56.5.1 129630 1tq6A 413 43.25 c.37.1.8 107202 1wjpA 107 43.35 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 1s72Z 73 44.97 g.41.8.1 105345 1a1gA 90 45.43 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2ctuA 73 46.53 2eloA 37 48.19 1rmd 116 49.29 2cklB 165 51.60 1jkzA 46 52.99 g.3.7.5 66820 2apoB 60 54.73 g.41.16.1 127135 1hnnA 282 55.27 c.66.1.15 65895 1llmC 88 55.30 g.37.1.1,g.37.1.1 91059,91060 1b71A 191 55.64 a.25.1.1,g.41.5.1 16647,45246 1g47A 77 56.42 g.39.1.3,g.39.1.3 45147,45148 1a1hA 90 59.08 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2gagD 99 59.55 2eoyA 46 59.73 1j8fA 323 61.23 c.31.1.5 62738 2fcrA 173 63.96 c.23.5.1 31151 2dulA 378 68.38 1twfI 122 70.18 g.41.3.1,g.41.3.1 112733,112734 1z6uA 150 70.90 1srkA 35 70.92 g.37.1.1 105966 1up6A 416 71.13 c.2.1.5,d.162.1.2 107976,107977 1oksA 56 72.70 a.8.5.1 93271 1ubdC 124 73.34 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45053,45054,45055,45056 2a14A 263 73.73 c.66.1.15 125972 2gliA 160 74.69 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2dmiA 115 75.20 2pmzP 48 76.87 1k81A 36 80.30 g.59.1.1 72136 1vk6A 269 82.91 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1a7iA 81 85.61 g.39.1.3,g.39.1.3 45143,45144 1jr5A 90 88.23 a.150.1.1 67113 1iazA 179 89.55 b.97.1.1 62131