# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i13A 190 4.089 k.12.1.1 136964 1c3cA 429 8.228 a.127.1.1 19425 1ma3A 253 9.390 c.31.1.5 78883 1lv3A 68 10.83 g.39.1.9 78231 2ctdA 96 13.26 g.37.1.1,g.37.1.1 130792,130793 1yc5A 246 15.89 c.31.1.5 122910 1e4uA 78 17.04 g.44.1.1 59231 2hjhA 354 17.82 1jj2Y 73 22.79 g.41.8.1 63110 1ocvA 125 24.62 d.17.4.3 86810 1ffkW 73 26.38 g.41.8.1 45315 1uw4A 91 27.49 d.58.7.4 100071 2qgpA 112 29.41 1l8dA 112 30.89 h.4.12.1 73687 1rmdA 116 30.93 g.37.1.1,g.44.1.1 45025,45322 1we9A 64 30.96 g.50.1.2 114549 1ryt 190 31.16 1a1iA 90 32.26 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1vqoZ 83 32.36 g.41.8.1 120387 2gx9A 129 34.68 d.299.1.1 135828 1m3vA 122 34.73 g.39.1.3,g.39.1.3 84794,84795 2fcrA 173 35.48 c.23.5.1 31151 2rhkA 140 37.96 1wjvA 79 38.15 g.37.1.2,g.37.1.2 114713,114714 2drpA 66 39.49 g.37.1.1,g.37.1.1 45026,45027 1wiiA 85 41.42 g.41.3.4 114673 1g2fC 90 43.74 k.12.1.1 60222 2ausB 60 44.80 1lkoA 191 47.63 a.25.1.1,g.41.5.1 78063,78064 1jkzA 46 47.93 g.3.7.5 66820 1tq6A 413 48.68 c.37.1.8 107202 1meyC 87 50.02 k.12.1.1 46430 1s72Z 73 51.73 g.41.8.1 105345 1up6A 416 52.63 c.2.1.5,d.162.1.2 107976,107977 1q1aA 289 53.38 c.31.1.5 95561 2eloA 37 54.37 2z61A 370 56.08 1aayA 90 60.24 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1wjpA 107 63.53 g.37.1.1,g.37.1.1,g.37.1.1 114705,114706,114707 2b4yA 271 65.44 c.31.1.5 127868 2ctuA 73 66.25 2rfkB 53 66.33 1m2kA 249 68.61 c.31.1.5 84754 1hnnA 282 68.85 c.66.1.15 65895 2cklB 165 71.49 2rk5A 87 72.31 1rmd 116 72.53 2gagD 99 74.82 2c1cA 312 74.97 c.56.5.1 129630 1iazA 179 75.03 b.97.1.1 62131 2gliA 160 75.12 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2apoB 60 78.21 g.41.16.1 127135 1zaaC 87 79.27 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1jr5A 90 81.11 a.150.1.1 67113 1a1gA 90 81.72 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2pmzP 48 82.23 1j8fA 323 82.30 c.31.1.5 62738 2dulA 378 82.36 1buqA 125 82.84 d.17.4.3 38111 1up7A 417 84.22 c.2.1.5,d.162.1.2 113374,113375 1oksA 56 85.78 a.8.5.1 93271 2eoyA 46 88.97